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TTC30B tetratricopeptide repeat domain 30B [ Homo sapiens (human) ]

Gene ID: 150737, updated on 17-Jun-2019

Summary

Official Symbol
TTC30Bprovided by HGNC
Official Full Name
tetratricopeptide repeat domain 30Bprovided by HGNC
Primary source
HGNC:HGNC:26425
See related
Ensembl:ENSG00000196659
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IFT70; fleer; IFT70B
Orthologs

Genomic context

See TTC30B in Genome Data Viewer
Location:
2q31.2
Exon count:
1
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (177548998..177552796, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (178414880..178417524, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100130691 Neighboring gene microRNA 6512 Neighboring gene uncharacterized LOC105373762 Neighboring gene alkylglycerone phosphate synthase Neighboring gene uncharacterized LOC105373764 Neighboring gene tetratricopeptide repeat domain 30A Neighboring gene phosphodiesterase 11A

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Cilium Assembly, organism-specific biosystem (from REACTOME)
    Cilium Assembly, organism-specific biosystemCilia are membrane covered organelles that extend from the surface of eukaryotic cells. Cilia may be motile, such as respiratory cilia) or non-motile (such as the primary cilium) and are distinguishe...
  • Intraflagellar transport, organism-specific biosystem (from REACTOME)
    Intraflagellar transport, organism-specific biosystemIntraflagellar transport (IFT) is a motor-based process that controls the anterograde and retrograde transport of large protein complexes, ciliary cargo and structural components along the ciliary ax...
  • Organelle biogenesis and maintenance, organism-specific biosystem (from REACTOME)
    Organelle biogenesis and maintenance, organism-specific biosystemThis module describes the biogenesis of organelles. Organelles are subcellular structures of distinctive morphology and function. The organelles of human cells include: mitochondria, endoplasmic reti...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ30990

Gene Ontology Provided by GOA

Function Evidence Code Pubs
intraciliary transport particle B binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
intraciliary transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intraciliary transport involved in cilium assembly TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary tip TAS
Traceable Author Statement
more info
 
cilium TAS
Traceable Author Statement
more info
 
intraciliary transport particle B IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
tetratricopeptide repeat protein 30B
Names
TPR repeat protein 30B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152517.3NP_689730.2  tetratricopeptide repeat protein 30B

    See identical proteins and their annotated locations for NP_689730.2

    Status: VALIDATED

    Source sequence(s)
    AC073834, AI498353, AW007843, BC033795, DA260391, DA557876
    Consensus CDS
    CCDS42784.1
    UniProtKB/Swiss-Prot
    Q8N4P2
    Related
    ENSP00000386181.2, ENST00000408939.3
    Conserved Domains (2) summary
    TIGR02917
    Location:26217
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:158182
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    177548998..177552796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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