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DBR1 debranching RNA lariats 1 [ Canis lupus familiaris (dog) ]

Gene ID: 609194, updated on 5-Mar-2024

Summary

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Official Symbol
DBR1provided by VGNC
Official Full Name
debranching RNA lariats 1provided by VGNC
Primary source
VGNC:VGNC:39786
See related
Ensembl:ENSCAFG00845023502
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DBR1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (34915650..34928302, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (34368284..34380893, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (34913997..34926603, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (34597534..34610147, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (34662956..34675492, complement)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase Neighboring gene 40S ribosomal protein S3a-like Neighboring gene armadillo repeat containing 8 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene NME/NM23 family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA lariat debranching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lariat debranching enzyme
Names
debranching enzyme homolog 1
XP_005634544.1
XP_038288383.1
XP_038288384.1
XP_038363687.1
XP_038363688.1
XP_038426927.1
XP_038426929.1
XP_038491120.1
XP_038491121.1
XP_852077.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    34915650..34928302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432456.1 → XP_038288384.1  lariat debranching enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C0K4U2, A0A8C0TNC6, A0A8I3PSP9
    Related
    ENSCAFP00845032559.1, ENSCAFT00845041532.1
    Conserved Domains (2) summary
    cd00844
    Location:3 → 238
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:238 → 351
    DBR1; Lariat debranching enzyme, C-terminal domain

  2. XM_038432455.1 → XP_038288383.1  lariat debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0N0N9, A0A8C0QXE7, A0A8I3PF34
    Related
    ENSCAFP00845032523.1, ENSCAFT00845041480.1
    Conserved Domains (2) summary
    cd00844
    Location:3 → 264
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:246 → 378
    DBR1; Lariat debranching enzyme, C-terminal domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    34597534..34610147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507760.1 → XP_038363688.1  lariat debranching enzyme isoform X2

    Conserved Domains (2) summary
    cd00844
    Location:3 → 238
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:238 → 351
    DBR1; Lariat debranching enzyme, C-terminal domain

  2. XM_038507759.1 → XP_038363687.1  lariat debranching enzyme isoform X1

    Conserved Domains (2) summary
    cd00844
    Location:3 → 264
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:246 → 378
    DBR1; Lariat debranching enzyme, C-terminal domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    34662956..34675492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635193.1 → XP_038491121.1  lariat debranching enzyme isoform X2

    Conserved Domains (2) summary
    cd00844
    Location:3 → 238
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:238 → 351
    DBR1; Lariat debranching enzyme, C-terminal domain

  2. XM_038635192.1 → XP_038491120.1  lariat debranching enzyme isoform X1

    Conserved Domains (2) summary
    cd00844
    Location:3 → 264
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:246 → 378
    DBR1; Lariat debranching enzyme, C-terminal domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    34913997..34926603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038571001.1 → XP_038426929.1  lariat debranching enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C0K4U2, A0A8C0TNC6, A0A8I3PSP9
    Conserved Domains (2) summary
    cd00844
    Location:3 → 238
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:238 → 351
    DBR1; Lariat debranching enzyme, C-terminal domain

  2. XM_038570999.1 → XP_038426927.1  lariat debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0N0N9, A0A8C0QXE7, A0A8I3PF34
    Conserved Domains (2) summary
    cd00844
    Location:3 → 264
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:246 → 378
    DBR1; Lariat debranching enzyme, C-terminal domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    34368284..34380893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005634487.3 → XP_005634544.1  lariat debranching enzyme isoform X2

    UniProtKB/TrEMBL
    A0A8C0K4U2, A0A8C0TNC6, A0A8I3PSP9
    Conserved Domains (2) summary
    cd00844
    Location:3 → 238
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:238 → 351
    DBR1; Lariat debranching enzyme, C-terminal domain

  2. XM_846984.4 → XP_852077.1  lariat debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0N0N9, A0A8C0QXE7, A0A8I3PF34
    Conserved Domains (2) summary
    cd00844
    Location:3 → 264
    MPP_Dbr1_N; Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain
    pfam05011
    Location:246 → 378
    DBR1; Lariat debranching enzyme, C-terminal domain
Nucleotide Protein
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