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C1H9orf85 chromosome 1 C9orf85 homolog [ Canis lupus familiaris (dog) ]

Gene ID: 608739, updated on 17-Aug-2024

Summary

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Official Symbol
C1H9orf85provided by VGNC
Official Full Name
chromosome 1 C9orf85 homologprovided by VGNC
Primary source
VGNC:VGNC:52513
See related
Ensembl:ENSCAFG00845000099
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (86196874..86256989, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (86211407..86271561, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (86421732..86482033, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (85958138..86018294, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (85662864..85722807, complement)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene guanine deaminase Neighboring gene uncharacterized LOC102153343 Neighboring gene abhydrolase domain containing 17B, depalmitoylase Neighboring gene uncharacterized LOC106559439 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C9orf85 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    86196874..86256989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038655203.1 → XP_038511131.1  uncharacterized protein C9orf85 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I3M9V1, A0A8P0S806
    Related
    ENSCAFP00845000128.1, ENSCAFT00845000166.1
    Conserved Domains (1) summary
    pfam10217
    Location:14 → 102
    DUF2039; Uncharacterized conserved protein (DUF2039)

  2. XM_038655204.1 → XP_038511132.1  uncharacterized protein C9orf85 homolog isoform X2

    Conserved Domains (1) summary
    pfam10217
    Location:26 → 94
    DUF2039; Uncharacterized conserved protein (DUF2039)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    85958138..86018294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038466392.1 → XP_038322320.1  uncharacterized protein C9orf85 homolog isoform X1

  2. XM_038466393.1 → XP_038322321.1  uncharacterized protein C9orf85 homolog isoform X2

    Conserved Domains (1) summary
    pfam10217
    Location:26 → 94
    DUF2039; Uncharacterized conserved protein (DUF2039)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    85662864..85722807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038591391.1 → XP_038447319.1  uncharacterized protein C9orf85 homolog isoform X1

  2. XM_038591392.1 → XP_038447320.1  uncharacterized protein C9orf85 homolog isoform X2

    Conserved Domains (1) summary
    pfam10217
    Location:26 → 94
    DUF2039; Uncharacterized conserved protein (DUF2039)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    86421732..86482033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038527087.1 → XP_038383015.1  uncharacterized protein C9orf85 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5U5, A0A8C0R801

  2. XM_038527088.1 → XP_038383016.1  uncharacterized protein C9orf85 homolog isoform X2

    Conserved Domains (1) summary
    pfam10217
    Location:26 → 94
    DUF2039; Uncharacterized conserved protein (DUF2039)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    86211407..86271561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_845851.6 → XP_850944.1  uncharacterized protein C9orf85 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I3M9V1, A0A8P0S806
    Conserved Domains (1) summary
    pfam10217
    Location:14 → 102
    DUF2039; Uncharacterized conserved protein (DUF2039)

  2. XM_038585305.1 → XP_038441233.1  uncharacterized protein C9orf85 homolog isoform X2

    Conserved Domains (1) summary
    pfam10217
    Location:26 → 94
    DUF2039; Uncharacterized conserved protein (DUF2039)
Nucleotide Protein
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