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C9orf85 chromosome 9 open reading frame 85 [ Homo sapiens (human) ]

Gene ID: 138241, updated on 12-Aug-2022

Summary

Official Symbol
C9orf85provided by HGNC
Official Full Name
chromosome 9 open reading frame 85provided by HGNC
Primary source
HGNC:HGNC:28784
See related
Ensembl:ENSG00000155621 AllianceGenome:HGNC:28784
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in urinary bladder (RPKM 3.1), testis (RPKM 2.7) and 25 other tissues See more
Orthologs
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Genomic context

See C9orf85 in Genome Data Viewer
Location:
9q21.13
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (71911639..71986058)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (84061989..84136715)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (74526555..74600974)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene glucosamine-6-phosphate deaminase 2 pseudogene Neighboring gene abhydrolase domain containing 17B, depalmitoylase Neighboring gene Sharpr-MPRA regulatory region 3495 Neighboring gene heat shock protein family B (small) member 1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC61599

General protein information

Preferred Names
uncharacterized protein C9orf85

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365053.2NP_001351982.1  uncharacterized protein C9orf85 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL138751
    UniProtKB/Swiss-Prot
    Q86U95
    Related
    ENSP00000366230.3, ENST00000377031.7
    Conserved Domains (1) summary
    pfam10217
    Location:14102
    DUF2039; Uncharacterized conserved protein (DUF2039)
  2. NM_001365055.2NP_001351984.1  uncharacterized protein C9orf85 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AA442437, BC010179, BC052375, BQ020559, BQ431408, CB113688
    Conserved Domains (1) summary
    pfam10217
    Location:883
    DUF2039; Uncharacterized conserved protein (DUF2039)
  3. NM_001365057.2NP_001351986.1  uncharacterized protein C9orf85 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL138751, BC028019
    UniProtKB/TrEMBL
    F6X0R3
    Conserved Domains (1) summary
    pfam10217
    Location:1469
    DUF2039; Uncharacterized conserved protein (DUF2039)
  4. NM_182505.5NP_872311.2  uncharacterized protein C9orf85 isoform 2

    See identical proteins and their annotated locations for NP_872311.2

    Status: VALIDATED

    Source sequence(s)
    BC010179, BC052375, BQ020559, BQ431408, CB113688
    Consensus CDS
    CCDS6639.1
    UniProtKB/Swiss-Prot
    Q96MD7
    Related
    ENSP00000334289.2, ENST00000334731.7
    Conserved Domains (1) summary
    pfam10217
    Location:14102
    DUF2039; Uncharacterized conserved protein (DUF2039)

RNA

  1. NR_157408.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK311206, AL138751
  2. NR_157409.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138751
  3. NR_157410.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138751

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    71911639..71986058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047422767.1XP_047278723.1  uncharacterized protein C9orf85 isoform X1

  2. XM_047422768.1XP_047278724.1  uncharacterized protein C9orf85 isoform X2

  3. XM_047422769.1XP_047278725.1  uncharacterized protein C9orf85 isoform X3

    UniProtKB/TrEMBL
    F6X0R3

RNA

  1. XR_007061245.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    84061989..84136715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198394.1: Suppressed sequence

    Description
    NM_198394.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.