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klc1 kinesin light chain 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 550001, updated on 17-Aug-2024

Summary

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Official Symbol
klc1provided by Xenbase
Official Full Name
kinesin light chain 1provided by Xenbase
Primary source
Xenbase:XB-GENE-855889
See related
Ensembl:ENSXETG00000023054
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
klc; kns2; kns2a; kinesin-II
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (98513105..98559982)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (77641522..77685334)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene BAG cochaperone 5 Neighboring gene cytochrome c oxidase assembly factor 8 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 3 Neighboring gene zinc finger FYVE-type containing 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of kinesin complex IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kinesin light chain 1
Names
kinesin 2 60/70kDa
kinesin ii
NP_001017247.1
XP_012823938.1
XP_012823939.1
XP_012823940.1
XP_012823941.1
XP_012823942.1
XP_012823944.1
XP_012823945.1
XP_031746344.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017247.2 → NP_001017247.1  kinesin light chain 1

    See identical proteins and their annotated locations for NP_001017247.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760139
    UniProtKB/TrEMBL
    Q28IZ7
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    98513105..98559982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968484.3 → XP_012823938.1  kinesin light chain 1 isoform X1

    See identical proteins and their annotated locations for XP_012823938.1

    UniProtKB/TrEMBL
    A0A8J1ILI7
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  2. XM_012968487.3 → XP_012823941.1  kinesin light chain 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8PNY7
    Related
    ENSXETP00000060857.3, ENSXETT00000065713.3
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  3. XM_012968486.3 → XP_012823940.1  kinesin light chain 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SW89
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  4. XM_012968488.3 → XP_012823942.1  kinesin light chain 1 isoform X4

    UniProtKB/TrEMBL
    A0A8J0SL30
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  5. XM_012968490.3 → XP_012823944.1  kinesin light chain 1 isoform X5

    UniProtKB/TrEMBL
    A0A8J0SVP3
    Conserved Domains (3) summary
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13374
    Location:296 → 337
    TPR_10; Tetratricopeptide repeat
    pfam13424
    Location:251 → 329
    TPR_12; Tetratricopeptide repeat

  6. XM_012968491.3 → XP_012823945.1  kinesin light chain 1 isoform X6

    UniProtKB/TrEMBL
    A0A8J0SUX0
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  7. XM_031890484.1 → XP_031746344.1  kinesin light chain 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1ILI7
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat

  8. XM_012968485.3 → XP_012823939.1  kinesin light chain 1 isoform X1

    See identical proteins and their annotated locations for XP_012823939.1

    UniProtKB/TrEMBL
    A0A8J1ILI7
    Conserved Domains (3) summary
    TIGR02168
    Location:35 → 149
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00006
    Location:297 → 325
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:296 → 370
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein Strain
Heading Accession and Version

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