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OPN4 opsin 4 [ Bos taurus (cattle) ]

Gene ID: 515152, updated on 6-Jun-2024

Summary

Official Symbol
OPN4provided by VGNC
Official Full Name
opsin 4provided by VGNC
Primary source
VGNC:VGNC:32437
See related
BGD:BT20992; Ensembl:ENSBTAG00000032800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See OPN4 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (41312627..41322731)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene WAPL cohesin release factor Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene LIM domain binding 3 Neighboring gene bone morphogenetic protein receptor type 1A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
melanopsin
Names
opsin 4 (melanopsin)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192399.1NP_001179328.1  melanopsin

    See identical proteins and their annotated locations for NP_001179328.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000028
    UniProtKB/TrEMBL
    A0AAA9TNQ0
    Related
    ENSBTAP00000098857.1, ENSBTAT00000107651.1
    Conserved Domains (2) summary
    pfam00001
    Location:87350
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:78245
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    41312627..41322731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882504.1XP_059738487.1  melanopsin isoform X1

    UniProtKB/TrEMBL
    A0AAA9TNQ0