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STX3 syntaxin 3 [ Bos taurus (cattle) ]

Gene ID: 513275, updated on 6-Jun-2024

Summary

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Official Symbol
STX3provided by VGNC
Official Full Name
syntaxin 3provided by VGNC
Primary source
VGNC:VGNC:35439
See related
BGD:BT10614; Ensembl:ENSBTAG00000012820
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See STX3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (82960918..83072619)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441591 Neighboring gene olfactory receptor 10V1 Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene cobalamin binding intrinsic factor Neighboring gene transcobalamin 1 Neighboring gene oocyte secreted protein 2 Neighboring gene membrane spanning 4-domains A3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC166049

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytic insertion of neurotransmitter receptor to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101971.1 → NP_001095441.1  syntaxin-3

    See identical proteins and their annotated locations for NP_001095441.1

    Status: PROVISIONAL

    Source sequence(s)
    BC147964
    UniProtKB/TrEMBL
    A0AAA9SG26, A6QLH3
    Related
    ENSBTAP00000066800.2, ENSBTAT00000081711.2
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin; Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    82960918..83072619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059874676.1 → XP_059730659.1  syntaxin-3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MU02

  2. XM_059874673.1 → XP_059730656.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MU02

  3. XM_059874674.1 → XP_059730657.1  syntaxin-3 isoform X6

    UniProtKB/TrEMBL
    A0A3Q1MU02
    Related
    ENSBTAP00000084812.1, ENSBTAT00000094304.1

  4. XM_059874675.1 → XP_059730658.1  syntaxin-3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MU02

  5. XM_059874672.1 → XP_059730655.1  syntaxin-3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MU02

  6. XM_024975211.2 → XP_024830979.1  syntaxin-3 isoform X3

    UniProtKB/TrEMBL
    A0AAA9SG26, A6QLH3
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin; Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  7. XM_024975208.2 → XP_024830976.1  syntaxin-3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1MU02, F1MDL3
    Related
    ENSBTAP00000017032.7, ENSBTAT00000017032.7
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    pfam05739
    Location:227 → 278
    SNARE; SNARE domain

  8. XM_024975209.2 → XP_024830977.1  syntaxin-3 isoform X4

    UniProtKB/TrEMBL
    A0AAA9SG26
    Related
    ENSBTAP00000082612.1, ENSBTAT00000092093.1
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    pfam05739
    Location:228 → 278
    SNARE; SNARE domain

  9. XM_024975210.2 → XP_024830978.1  syntaxin-3 isoform X8

    UniProtKB/TrEMBL
    A0A3Q1MU02, A0AAA9T1N5
    Related
    ENSBTAP00000089571.1, ENSBTAT00000092757.1
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  10. XM_059874677.1 → XP_059730660.1  syntaxin-3 isoform X9

    UniProtKB/TrEMBL
    A0A3Q1MU02
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials