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PCBP1 poly(rC) binding protein 1 [ Bos taurus (cattle) ]

Gene ID: 509917, updated on 5-Mar-2024

Summary

Gene symbol
PCBP1
Gene description
poly(rC) binding protein 1
See related
BGD:BT13792; Ensembl:ENSBTAG00000008985
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
hnRNP-E1
Orthologs
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Genomic context

See PCBP1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (68411330..68412803)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346598 Neighboring gene uncharacterized LOC101905499 Neighboring gene chromosome 11 C2orf42 homolog Neighboring gene TIA1 cytotoxic granule associated RNA binding protein Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC140822

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
poly(rC)-binding protein 1
Names
alpha-CP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015565.1NP_001015565.1  poly(rC)-binding protein 1

    See identical proteins and their annotated locations for NP_001015565.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021017
    UniProtKB/Swiss-Prot
    Q5E9A3
    UniProtKB/TrEMBL
    A0A452DKH0
    Related
    ENSBTAP00000087597.1, ENSBTAT00000094697.1
    Conserved Domains (3) summary
    cd22515
    Location:1382
    KH-I_PCBP1_2_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cd22518
    Location:92169
    KH-I_PCBP1_2_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
    cd22521
    Location:276351
    KH-I_PCBP1_2_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    68411330..68412803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)