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KLF9 KLF transcription factor 9 [ Sus scrofa (pig) ]

Gene ID: 494562, updated on 5-Mar-2024

Summary

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Official Symbol
KLF9provided by VGNC
Official Full Name
KLF transcription factor 9provided by VGNC
Primary source
VGNC:VGNC:103114
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
BTEB; BTEB1
Expression
Ubiquitous expression in kidney (RPKM 38.4), subcutaneous adipose (RPKM 28.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See KLF9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (223723613..223747661, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (250030719..250054070)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene MAM domain containing 2 Neighboring gene structural maintenance of chromosomes 5 Neighboring gene uncharacterized LOC110255683 Neighboring gene transient receptor potential cation channel subfamily M member 3 Neighboring gene microRNA mir-204

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Cell-type expression, immunolocalization, and deoxyribonucleic acid-binding activity of basic transcription element binding transcription factor, an Sp-related family member, in porcine endometrium of pregnancy. Wang Y, et al. Biol Reprod, 1997 Oct. PMID 9314570
  2. Selective interactions of Kruppel-like factor 9/basic transcription element-binding protein with progesterone receptor isoforms A and B determine transcriptional activity of progesterone-responsive genes in endometrial epithelial cells. Zhang XL, et al. J Biol Chem, 2003 Jun 13. PMID 12672823
  3. A novel functional interaction between the Sp1-like protein KLF13 and SREBP-Sp1 activation complex underlies regulation of low density lipoprotein receptor promoter function. Natesampillai S, et al. J Biol Chem, 2006 Feb 10. PMID 16303770
  4. Porcine KLF gene family: Structure, mapping, and phylogenetic analysis. Chen Z, et al. Genomics, 2010 Feb. PMID 19941950
  5. Thyroid hormone regulates hematopoiesis via the TR-KLF9 axis. Zhang Y, et al. Blood, 2017 Nov 16. PMID 28972010

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 9
Names
BTE-binding protein 1
BTEB transcription factor
GC-box-binding protein 1
Kruppel like factor 9
basic transcription element-binding protein 1
transcription factor BTEB1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011504.1 → NP_001011504.1  Krueppel-like factor 9

    See identical proteins and their annotated locations for NP_001011504.1

    Status: PROVISIONAL

    Source sequence(s)
    AY850383
    UniProtKB/Swiss-Prot
    P79288, Q5I6A2
    UniProtKB/TrEMBL
    C7EMF2
    Conserved Domains (3) summary
    COG5048
    Location:94 → 234
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:145 → 167
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd21578
    Location:3 → 144
    KLF9_N; N-terminal domain of Kruppel-like factor 9

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    223723613..223747661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P79288.3 GenPept UniProtKB/Swiss-Prot:P79288

Gene LinkOut

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