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sdf2l1 stromal cell-derived factor 2-like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493395, updated on 17-Aug-2024

Summary

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Official Symbol
sdf2l1provided by Xenbase
Official Full Name
stromal cell-derived factor 2-like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-970744
See related
Ensembl:ENSXETG00000018564
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (153821885..153827142)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (145351928..145357157)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene hypermethylated in cancer 2 Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene YdjC chitooligosaccharide deacetylase homolog Neighboring gene microRNA mir-130b Neighboring gene microRNA mir-454

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC79547

General protein information

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Preferred Names
stromal cell-derived factor 2-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008032.1 → NP_001008033.1  stromal cell-derived factor 2-like protein 1 precursor

    See identical proteins and their annotated locations for NP_001008033.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080914
    UniProtKB/TrEMBL
    A0A6I8R0L7, F6WNG3, F6X8L2, Q66JH3
    Related
    ENSXETP00000040186.4, ENSXETT00000040186.5
    Conserved Domains (1) summary
    COG1928
    Location:49 → 209
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    153821885..153827142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials