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ZNF143 zinc finger protein 143 [ Canis lupus familiaris (dog) ]

Gene ID: 485384, updated on 17-Aug-2024

Summary

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Official Symbol
ZNF143provided by VGNC
Official Full Name
zinc finger protein 143provided by VGNC
Primary source
VGNC:VGNC:48661
See related
Ensembl:ENSCAFG00845013767
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (33636440..33696380)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (32325498..32385206)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (33360300..33420050)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (32900150..32959597)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (33066531..33126195)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene importin 7 Neighboring gene uncharacterized LOC111091552 Neighboring gene small nucleolar RNA SNORA23 Neighboring gene dCTP pyrophosphatase 1-like Neighboring gene uncharacterized LOC111091553 Neighboring gene uncharacterized LOC119865006 Neighboring gene U1 spliceosomal RNA Neighboring gene 40S ribosomal protein S19-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 143
XP_005633717.2
XP_022263540.1
XP_022263541.1
XP_022263542.1
XP_038286406.1
XP_038286407.1
XP_038286408.1
XP_038286410.1
XP_038361711.1
XP_038361712.1
XP_038361713.1
XP_038361714.1
XP_038424944.1
XP_038424945.1
XP_038424946.1
XP_038424947.1
XP_038489123.1
XP_038489124.1
XP_038489125.1
XP_038489126.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    33636440..33696380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430480.1 → XP_038286408.1  zinc finger protein 143 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ML58
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_038430478.1 → XP_038286406.1  zinc finger protein 143 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_038430479.1 → XP_038286407.1  zinc finger protein 143 isoform X2

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:282 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:270 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_038430482.1 → XP_038286410.1  zinc finger protein 143 isoform X4

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8C0S5D3, A0A8I3NHF8, A0A8I3NRL7
    Related
    ENSCAFP00845019442.1, ENSCAFT00845024698.1
    Conserved Domains (2) summary
    COG5048
    Location:250 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    32900150..32959597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505785.1 → XP_038361713.1  zinc finger protein 143 isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_038505783.1 → XP_038361711.1  zinc finger protein 143 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_038505784.1 → XP_038361712.1  zinc finger protein 143 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:282 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:270 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_038505786.1 → XP_038361714.1  zinc finger protein 143 isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:250 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    33066531..33126195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633197.1 → XP_038489125.1  zinc finger protein 143 isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_038633195.1 → XP_038489123.1  zinc finger protein 143 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_038633196.1 → XP_038489124.1  zinc finger protein 143 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:282 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:270 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_038633198.1 → XP_038489126.1  zinc finger protein 143 isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:250 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    33360300..33420050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569018.1 → XP_038424946.1  zinc finger protein 143 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ML58
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_038569016.1 → XP_038424944.1  zinc finger protein 143 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_038569017.1 → XP_038424945.1  zinc finger protein 143 isoform X2

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:282 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:270 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_038569019.1 → XP_038424947.1  zinc finger protein 143 isoform X4

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8C0S5D3, A0A8I3NHF8, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:250 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32325498..32385206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005633660.4 → XP_005633717.2  zinc finger protein 143 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ML58
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_022407832.2 → XP_022263540.1  zinc finger protein 143 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:283 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_022407833.2 → XP_022263541.1  zinc finger protein 143 isoform X2

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:282 → 455
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:270 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_022407834.2 → XP_022263542.1  zinc finger protein 143 isoform X4

    UniProtKB/TrEMBL
    A0A8C0S5C2, A0A8C0S5D3, A0A8I3NHF8, A0A8I3NRL7
    Conserved Domains (2) summary
    COG5048
    Location:250 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 260
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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