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ZFR2 zinc finger RNA binding protein 2 [ Canis lupus familiaris (dog) ]

Gene ID: 485051, updated on 5-Mar-2024

Summary

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Official Symbol
ZFR2provided by VGNC
Official Full Name
zinc finger RNA binding protein 2provided by VGNC
Primary source
VGNC:VGNC:48621
See related
Ensembl:ENSCAFG00845007434
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (56302123..56354888)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (55367494..55420244)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (56038574..56091496)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (55357961..55410850)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (55839774..55892748)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene death associated protein kinase 3 Neighboring gene microRNA mir-8802 Neighboring gene ATCAY kinesin light chain interacting caytaxin Neighboring gene megakaryocyte-associated tyrosine kinase Neighboring gene retina and anterior neural fold homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger RNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    56302123..56354888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429109.1 → XP_038285037.1  zinc finger RNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Related
    ENSCAFP00845010359.1, ENSCAFT00845013351.1
    Conserved Domains (4) summary
    smart00451
    Location:254 → 283
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:256 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:6 → 183
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02675
    Location:653 → 901
    DZF; DZF domain

  2. XM_038429110.1 → XP_038285038.1  zinc finger RNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I3N3X5, A0A8P0P7T9
    Related
    ENSCAFP00845010239.1, ENSCAFT00845013171.1
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PRK07003
    Location:12 → 213
    PRK07003; DNA polymerase III subunit gamma/tau
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 907
    DZF; DZF domain

  3. XM_038429107.1 → XP_038285035.1  zinc finger RNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QIX3, A0A8I3N5S0, A0A8P0NK71
    Related
    ENSCAFP00845010210.1, ENSCAFT00845013122.1
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:15 → 201
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 923
    DZF; DZF domain

  4. XM_038429108.1 → XP_038285036.1  zinc finger RNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:15 → 201
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 922
    DZF; DZF domain

  5. XM_038429111.1 → XP_038285039.1  zinc finger RNA-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (3) summary
    smart00451
    Location:110 → 139
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:112 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:509 → 757
    DZF; DZF domain

RNA

  1. XR_005298203.1 RNA Sequence

  2. XR_005298202.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    55357961..55410850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504682.1 → XP_038360610.1  zinc finger RNA-binding protein 2 isoform X6

  2. XM_038504683.1 → XP_038360611.1  zinc finger RNA-binding protein 2 isoform X4

  3. XM_038504680.1 → XP_038360608.1  zinc finger RNA-binding protein 2 isoform X1

  4. XM_038504681.1 → XP_038360609.1  zinc finger RNA-binding protein 2 isoform X2

  5. XM_038504684.1 → XP_038360612.1  zinc finger RNA-binding protein 2 isoform X5

    Conserved Domains (3) summary
    smart00451
    Location:110 → 139
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:112 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:509 → 757
    DZF; DZF domain

RNA

  1. XR_005341402.1 RNA Sequence

  2. XR_005341401.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    55839774..55892748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038631906.1 → XP_038487834.1  zinc finger RNA-binding protein 2 isoform X3

  2. XM_038631907.1 → XP_038487835.1  zinc finger RNA-binding protein 2 isoform X4

  3. XM_038631904.1 → XP_038487832.1  zinc finger RNA-binding protein 2 isoform X1

  4. XM_038631905.1 → XP_038487833.1  zinc finger RNA-binding protein 2 isoform X2

  5. XM_038631908.1 → XP_038487836.1  zinc finger RNA-binding protein 2 isoform X5

RNA

  1. XR_005409221.1 RNA Sequence

  2. XR_005409220.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    56038574..56091496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038567781.1 → XP_038423709.1  zinc finger RNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (4) summary
    smart00451
    Location:254 → 283
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:256 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:6 → 183
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02675
    Location:653 → 901
    DZF; DZF domain

  2. XM_038567782.1 → XP_038423710.1  zinc finger RNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0MJD8

  3. XM_038567779.1 → XP_038423707.1  zinc finger RNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QIX3

  4. XM_038567780.1 → XP_038423708.1  zinc finger RNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QIX3

  5. XM_038567783.1 → XP_038423711.1  zinc finger RNA-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (3) summary
    smart00451
    Location:110 → 139
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:112 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:509 → 757
    DZF; DZF domain

RNA

  1. XR_005375222.1 RNA Sequence

  2. XR_005375221.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    55367494..55420244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038455132.1 → XP_038311060.1  zinc finger RNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (4) summary
    smart00451
    Location:254 → 283
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:256 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:6 → 183
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02675
    Location:653 → 901
    DZF; DZF domain

  2. XM_014122080.3 → XP_013977555.1  zinc finger RNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8I3N3X5, A0A8P0P7T9
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PRK07003
    Location:12 → 213
    PRK07003; DNA polymerase III subunit gamma/tau
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 907
    DZF; DZF domain

  3. XM_005633065.4 → XP_005633122.1  zinc finger RNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QIX3, A0A8I3N5S0, A0A8P0NK71
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:15 → 201
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 923
    DZF; DZF domain

  4. XM_014122079.3 → XP_013977554.1  zinc finger RNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (4) summary
    smart00451
    Location:276 → 305
    ZnF_U1; U1-like zinc finger
    PHA03247
    Location:15 → 201
    PHA03247; large tegument protein UL36; Provisional
    sd00020
    Location:278 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:675 → 922
    DZF; DZF domain

  5. XM_038455133.1 → XP_038311061.1  zinc finger RNA-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C0QIX3
    Conserved Domains (3) summary
    smart00451
    Location:110 → 139
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:112 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:509 → 757
    DZF; DZF domain

RNA

  1. XR_005312480.1 RNA Sequence

  2. XR_005312479.1 RNA Sequence

Nucleotide Protein
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