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SART3 spliceosome associated factor 3, U4/U6 recycling protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 467123, updated on 17-Aug-2024

Summary

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Official Symbol
SART3provided by VGNC
Official Full Name
spliceosome associated factor 3, U4/U6 recycling proteinprovided by VGNC
Primary source
VGNC:VGNC:8528
Locus tag
CK820_G0015986
See related
Ensembl:ENSPTRG00000005404
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SART3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (115330885..115370120, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (113953142..113992351, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107967633 Neighboring gene FIC domain protein adenylyltransferase Neighboring gene iron-sulfur cluster assembly enzyme Neighboring gene transmembrane protein 119 Neighboring gene selectin P ligand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamous cell carcinoma antigen recognized by T-cells 3
Names
squamous cell carcinoma antigen recognized by T cells 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    115330885..115370120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016924118.3 → XP_016779607.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X4

    UniProtKB/TrEMBL
    A0A2I3TNH0, A0A2J8MZG5, A0A2J8MZG9, A0A6D2Y3D5
    Related
    ENSPTRP00000090783.1
    Conserved Domains (4) summary
    cd12391
    Location:669 → 742
    RRM1_SART3; RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    cd12392
    Location:763 → 843
    RRM2_SART3; RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    pfam16605
    Location:841 → 897
    LSM_int_assoc; LSM-interacting associated unstructured
    cl26993
    Location:100 → 480
    Suf; Suppressor of forked protein (Suf)

  2. XM_001163755.6 → XP_001163755.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

    See identical proteins and their annotated locations for XP_001163755.1

    UniProtKB/TrEMBL
    A0A2J8MZG3, A0A2J8MZG9, A0A803KJY8, K7AA78
    Conserved Domains (4) summary
    cd12391
    Location:705 → 778
    RRM1_SART3; RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    cd12392
    Location:799 → 879
    RRM2_SART3; RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    pfam16605
    Location:877 → 933
    LSM_int_assoc; LSM-interacting associated unstructured
    cl26993
    Location:100 → 460
    Suf; Suppressor of forked protein (Suf)

  3. XM_016924117.3 → XP_016779606.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MZG9

  4. XM_009426169.3 → XP_009424444.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MZG9, H2Q6T4
    Related
    ENSPTRP00000009168.3
    Conserved Domains (6) summary
    COG0724
    Location:654 → 876
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:100 → 478
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    cd12391
    Location:723 → 796
    RRM1_SART3; RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    cd12392
    Location:817 → 897
    RRM2_SART3; RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins
    pfam08424
    Location:351 → 504
    NRDE-2; NRDE-2, necessary for RNA interference
    pfam16605
    Location:895 → 951
    LSM_int_assoc; LSM-interacting associated unstructured
Nucleotide Protein
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