U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZSCAN21 zinc finger and SCAN domain containing 21 [ Pan troglodytes (chimpanzee) ]

Gene ID: 463584, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ZSCAN21provided by VGNC
Official Full Name
zinc finger and SCAN domain containing 21provided by VGNC
Primary source
VGNC:VGNC:4591
Locus tag
CK820_G0047484
See related
Ensembl:ENSPTRG00000019469
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
ZNF38
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (109516069..109531375)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (105862786..105878110)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107975883 Neighboring gene zinc finger with KRAB and SCAN domains 1 Neighboring gene zinc finger protein 3 Neighboring gene COP9 signalosome subunit 6 Neighboring gene microRNA mir-25 Neighboring gene minichromosome maintenance complex component 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An empirical test for branch-specific positive selection. Nickel GC, et al. Genetics, 2008 Aug. PMID 18689901, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and SCAN domain-containing protein 21
Names
zinc finger protein 38

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135617.1 → NP_001129089.1  zinc finger and SCAN domain-containing protein 21

    See identical proteins and their annotated locations for NP_001129089.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ977351
    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01
    Related
    ENSPTRP00000064858.1, ENSPTRT00000100351.1
    Conserved Domains (4) summary
    smart00431
    Location:42 → 153
    SCAN; leucine rich region
    COG5048
    Location:276 → 453
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:390 → 410
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:446 → 466
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    109516069..109531375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009453240.3 → XP_009451515.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    See identical proteins and their annotated locations for XP_009451515.1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01
    Conserved Domains (4) summary
    smart00431
    Location:42 → 153
    SCAN; leucine rich region
    COG5048
    Location:276 → 453
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:390 → 410
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:446 → 466
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_009453244.4 → XP_009451519.1  zinc finger and SCAN domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SQP4, A0A2J8Q0H4, A0A6D2VYX2
    Related
    ENSPTRP00000078846.1
    Conserved Domains (1) summary
    smart00431
    Location:42 → 153
    SCAN; leucine rich region

  3. XM_024357590.3 → XP_024213358.1  zinc finger and SCAN domain-containing protein 21 isoform X3

    Conserved Domains (1) summary
    smart00431
    Location:42 → 153
    SCAN; leucine rich region

  4. XM_054687092.2 → XP_054543067.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01

  5. XM_054687093.2 → XP_054543068.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01

  6. XM_063813802.1 → XP_063669872.1  zinc finger and SCAN domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SQP4, A0A2J8Q0H4, A0A6D2VYX2

  7. XM_054687094.2 → XP_054543069.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01

  8. XM_063813803.1 → XP_063669873.1  zinc finger and SCAN domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SQP4, A0A2J8Q0H4, A0A6D2VYX2

  9. XM_063813804.1 → XP_063669874.1  zinc finger and SCAN domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SQP4, A0A2J8Q0H4, A0A6D2VYX2

  10. XM_054687091.2 → XP_054543066.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01

  11. XM_054687095.2 → XP_054543070.1  zinc finger and SCAN domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SQP4, A0A2J8Q0H4, A0A6D2VYX2

  12. XM_063813805.1 → XP_063669875.1  zinc finger and SCAN domain-containing protein 21 isoform X3

  13. XM_063813801.1 → XP_063669871.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    UniProtKB/Swiss-Prot
    A2T712
    UniProtKB/TrEMBL
    A0A2J8Q0H9, A0A663D5R6, K7CI01
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2T712.1 GenPept UniProtKB/Swiss-Prot:A2T712

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials