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PABPC1L poly(A) binding protein cytoplasmic 1 like [ Pan troglodytes (chimpanzee) ]

Gene ID: 458273, updated on 3-Apr-2024

Summary

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Official Symbol
PABPC1Lprovided by VGNC
Official Full Name
poly(A) binding protein cytoplasmic 1 likeprovided by VGNC
Primary source
VGNC:VGNC:9939
Locus tag
CK820_G0020029
See related
Ensembl:ENSPTRG00000013531 Ensembl:ENSPTRG00000044192
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PABPC1L in Genome Data Viewer
Location:
chromosome: 20
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (51163593..51193243)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (51217680..51248737)

Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 15 Neighboring gene regulating synaptic membrane exocytosis 4 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta Neighboring gene uncharacterized LOC134809175 Neighboring gene translocase of outer mitochondrial membrane 34 Neighboring gene serine/threonine kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    51163593..51193243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054674444.2 → XP_054530419.1  polyadenylate-binding protein 1-like isoform X1

  2. XM_009437290.5 → XP_009435565.1  polyadenylate-binding protein 1-like isoform X2

    See identical proteins and their annotated locations for XP_009435565.1

    UniProtKB/TrEMBL
    A0A2J8MKB1, A0A6D2W578, H2QKE9
    Related
    ENSPTRP00000023243.4
    Conserved Domains (1) summary
    cl25887
    Location:11 → 324
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_010154238.1 RNA Sequence

  2. XR_010154240.1 RNA Sequence

  3. XR_010154244.1 RNA Sequence

  4. XR_010154242.1 RNA Sequence

  5. XR_010154245.1 RNA Sequence

  6. XR_010154243.1 RNA Sequence

  7. XR_010154246.1 RNA Sequence

  8. XR_010154239.1 RNA Sequence

  9. XR_008541237.2 RNA Sequence

  10. XR_010154247.1 RNA Sequence

  11. XR_008541236.2 RNA Sequence

  12. XR_010154241.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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