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cadm2 cell adhesion molecule 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448238, updated on 17-Aug-2024

Summary

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Official Symbol
cadm2provided by Xenbase
Official Full Name
cell adhesion molecule 2provided by Xenbase
Primary source
Xenbase:XB-GENE-998536
See related
Ensembl:ENSXETG00000026489
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
igsf4d
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (23288738..24247280, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (19105416..20064048, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408666 Neighboring gene vestigial like family member 3 Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene glucan (1,4-alpha-), branching enzyme 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC88954

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in neuronal cell body membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cell adhesion molecule 2
Names
immunoglobulin superfamily, member 4D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005713.1 → NP_001005713.1  cell adhesion molecule 2 precursor

    See identical proteins and their annotated locations for NP_001005713.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075300
    UniProtKB/Swiss-Prot
    Q6DJ83
    UniProtKB/TrEMBL
    A0A6I8PN55
    Related
    ENSXETP00000060314.3, ENSXETT00000061887.3
    Conserved Domains (4) summary
    smart00294
    Location:386 → 404
    4.1m; putative band 4.1 homologues' binding motif
    pfam13927
    Location:227 → 300
    Ig_3; Immunoglobulin domain
    cd05884
    Location:141 → 223
    Ig2_Necl-3; Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))
    cd07701
    Location:26 → 120
    Ig1_Necl-3; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    23288738..24247280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895847.1 → XP_031751707.1  cell adhesion molecule 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8PN55, A0A803J5A7
    Related
    ENSXETP00000102998.1, ENSXETT00000119380.1
    Conserved Domains (5) summary
    smart00294
    Location:356 → 374
    4.1m; putative band 4.1 homologues' binding motif
    smart00408
    Location:248 → 311
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:250 → 259
    Ig; Ig strand B [structural motif]
    cd05884
    Location:128 → 231
    IgI_2_Necl-3; Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3); member of the I-set of Ig superfamily domains
    cd07701
    Location:34 → 129
    IgV_1_Necl-3; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3; member of the V-set of Ig superfamily (IgSF) domains

  2. XM_031895846.1 → XP_031751706.1  cell adhesion molecule 2 isoform X1

    UniProtKB/TrEMBL
    A0A803J7Y2, A0A8J1J4W9
    Related
    ENSXETP00000103959.1, ENSXETT00000116756.1
    Conserved Domains (5) summary
    smart00294
    Location:394 → 412
    4.1m; putative band 4.1 homologues' binding motif
    smart00408
    Location:248 → 311
    IGc2; Immunoglobulin C-2 Type
    cd00096
    Location:250 → 259
    Ig; Ig strand B [structural motif]
    cd05884
    Location:128 → 231
    IgI_2_Necl-3; Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3); member of the I-set of Ig superfamily domains
    cd07701
    Location:34 → 129
    IgV_1_Necl-3; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3; member of the V-set of Ig superfamily (IgSF) domains
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DJ83.1 GenPept UniProtKB/Swiss-Prot:Q6DJ83

Gene LinkOut

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