ran RAN, member RAS oncogene family [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ranprovided by Xenbase
Official Full Name: RAN, member RAS oncogene familyprovided by Xenbase
Primary source: Xenbase:XB-GENE-489468
See related: Ensembl:ENSXETG00000027832
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: tc4; gsp1; ara24; ran-1; RanTC4
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (157737798..157746201, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (149220369..149228810, complement)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTP binding	ISS Inferred from Sequence or Structural Similarity more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables GTPase activity	ISS Inferred from Sequence or Structural Similarity more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables magnesium ion binding	ISS Inferred from Sequence or Structural Similarity more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within GTP metabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within mitotic sister chromatid segregation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within nucleocytoplasmic transport	IEA Inferred from Electronic Annotation more info
involved_in protein import into nucleus	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein import into nucleus	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
involved_in ribosomal subunit export from nucleus	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within snRNA import into nucleus	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in nuclear envelope	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: GTP-binding nuclear protein Ran

Names: GTPase Ran; ras-like protein TC4; ras-related nuclear protein

NP_001004829.1

EC 3.6.5.-

EC 3.6.5.1

EC 3.6.5.2

EC 3.6.5.3

EC 3.6.5.4

XP_012814466.1

EC 3.6.5.-

EC 3.6.5.1

EC 3.6.5.2

EC 3.6.5.3

EC 3.6.5.4

XP_017947430.1

EC 3.6.5.-

EC 3.6.5.1

EC 3.6.5.2

EC 3.6.5.3

EC 3.6.5.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001004829.1 → NP_001004829.1 GTP-binding nuclear protein Ran

See identical proteins and their annotated locations for NP_001004829.1

Status: PROVISIONAL

Source sequence(s)

BC074619

UniProtKB/Swiss-Prot

Q6GL85

Related

ENSXETP00000049065.4, ENSXETT00000049065.5

Conserved Domains (1) summary

PTZ00132
Location:1 → 216

PTZ00132; GTP-binding nuclear protein Ran; Provisional

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

157737798..157746201 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012959012.3 → XP_012814466.1 GTP-binding nuclear protein Ran isoform X1

See identical proteins and their annotated locations for XP_012814466.1

UniProtKB/TrEMBL

F7E0W8, Q28FV6

Conserved Domains (1) summary

PTZ00132
Location:1 → 216

PTZ00132; GTP-binding nuclear protein Ran; Provisional
XM_018091941.2 → XP_017947430.1 GTP-binding nuclear protein Ran isoform X1

UniProtKB/TrEMBL

F7E0W8, Q28FV6

Conserved Domains (1) summary

PTZ00132
Location:1 → 216

PTZ00132; GTP-binding nuclear protein Ran; Provisional