U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pibf1 progesterone immunomodulatory binding factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 445181, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
pibf1provided by ZNC
Official Full Name
progesterone immunomodulatory binding factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-94
See related
Ensembl:ENSDARG00000013006 AllianceGenome:ZFIN:ZDB-GENE-040801-94
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101063
Summary
Predicted to be involved in cilium assembly. Predicted to be active in centriolar satellite. Human ortholog(s) of this gene implicated in Joubert syndrome 33. Orthologous to human PIBF1 (progesterone immunomodulatory binding factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pibf1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (34616056..34685329, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (33883490..33952791, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene Kruppel like factor 12a Neighboring gene Kruppel like factor 5a Neighboring gene GPALPP motifs containing 1 Neighboring gene general transcription factor IIF, polypeptide 2a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in microtubule organizing center IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
progesterone-induced-blocking factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003575.1 → NP_001003575.1  progesterone-induced-blocking factor 1

    See identical proteins and their annotated locations for NP_001003575.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078228
    UniProtKB/TrEMBL
    Q6DC57
    Related
    ENSDARP00000016113.7, ENSDART00000008277.8
    Conserved Domains (1) summary
    COG1196
    Location:193 → 539
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    34616056..34685329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472211.2 → XP_021327886.1  progesterone-induced-blocking factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZU6, B8JHR8
    Conserved Domains (1) summary
    cl25732
    Location:85 → 411
    SMC_N; RecF/RecN/SMC N terminal domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394496.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    221938..223596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools