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TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein [ Gallus gallus (chicken) ]

Gene ID: 428134, updated on 17-Aug-2024

Summary

Symbol
TRPC4APprovided by CGNC
Full Name
transient receptor potential cation channel subfamily C member 4 associated proteinprovided by CGNC
Primary source
CGNC:2281
See related
Ensembl:ENSGALG00010022664
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See TRPC4AP in Genome Data Viewer
Location:
chromosome: 20
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (2926571..2959264)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (2701174..2733873)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC107054895 Neighboring gene ER degradation enhancing alpha-mannosidase like protein 2 Neighboring gene myosin, heavy chain 7B, cardiac muscle, beta Neighboring gene microRNA 499a Neighboring gene glutathione synthetase

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
short transient receptor potential channel 4-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039317.2NP_001034406.1  short transient receptor potential channel 4-associated protein

    See identical proteins and their annotated locations for NP_001034406.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000328
    UniProtKB/TrEMBL
    A0A8V0ZJ38, Q5ZKM6
    Related
    ENSGALP00010033365.1, ENSGALT00010055154.1
    Conserved Domains (1) summary
    pfam12463
    Location:381687
    DUF3689; Protein of unknown function (DUF3689)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2926571..2959264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040650741.2XP_040506675.1  short transient receptor potential channel 4-associated protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZS17

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2701174..2733873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930843.1XP_046786799.1  short transient receptor potential channel 4-associated protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZS17