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CACTIN cactin, spliceosome C complex subunit [ Gallus gallus (chicken) ]

Gene ID: 420073, updated on 5-Mar-2024

Summary

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Official Symbol
CACTINprovided by CGNC
Official Full Name
cactin, spliceosome C complex subunitprovided by CGNC
Primary source
CGNC:51173
See related
Ensembl:ENSGALG00010028115
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C28H19orf29
Orthologs
human mouse all
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Genomic context

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See CACTIN in Genome Data Viewer
Location:
chromosome: 28
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (1450704..1456173)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (1023452..1028891)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene tight junction protein 3 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, gamma Neighboring gene thromboxane A2 receptor Neighboring gene GIPC PDZ domain containing family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cactin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1450704..1456173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418192.8 → XP_418192.4  cactin

    UniProtKB/TrEMBL
    A0A8V1AHI7
    Related
    ENSGALP00010041869.1, ENSGALT00010068126.1
    Conserved Domains (1) summary
    smart01050
    Location:611 → 735
    CactinC_cactus; Cactus-binding C-terminus of cactin protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1023452..1028891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040692503.2 → XP_040548437.1  cactin

    UniProtKB/TrEMBL
    A0A8V1AHI7
    Conserved Domains (1) summary
    smart01050
    Location:608 → 732
    CactinC_cactus; Cactus-binding C-terminus of cactin protein
Nucleotide Protein
Heading Accession and Version

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