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RAE1 ribonucleic acid export 1 [ Gallus gallus (chicken) ]

Gene ID: 419324, updated on 3-Apr-2024

Summary

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Symbol
RAE1provided by CGNC
Full Name
ribonucleic acid export 1provided by CGNC
Primary source
CGNC:5777
See related
Ensembl:ENSGALG00010014997
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RAE1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (11980023..11988665, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (11767374..11776022, complement)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC419322 Neighboring gene phosphoenolpyruvate carboxykinase 1 Neighboring gene uncharacterized LOC107054840 Neighboring gene RNA binding motif protein 38 Neighboring gene uncharacterized LOC112530128 Neighboring gene SPO11, initiator of meiotic double stranded breaks Neighboring gene bone morphogenetic protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor RAE1; mRNA export factor
Names
RAE1 (RNA export 1, S.pombe) homolog
RAE1 RNA export 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030868.3 → NP_001026039.2  mRNA export factor RAE1

    See identical proteins and their annotated locations for NP_001026039.2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000328
    UniProtKB/TrEMBL
    A0A8V0YXB3
    Related
    ENSGALP00010020956.1, ENSGALT00010036083.1
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11980023..11988665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040650727.2 → XP_040506661.1  mRNA export factor isoform X2

    UniProtKB/TrEMBL
    A0A8V0YXB3
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_040650726.2 → XP_040506660.1  mRNA export factor isoform X1

    UniProtKB/TrEMBL
    A0A8V0YXB3
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_025142256.3 → XP_024998024.1  mRNA export factor isoform X1

    UniProtKB/TrEMBL
    A0A8V0YXB3
    Related
    ENSGALP00010020957.1, ENSGALT00010036084.1
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_046902884.1 → XP_046758840.1  mRNA export factor isoform X4

    UniProtKB/TrEMBL
    A0A8V0YQM5

  5. XM_040650729.2 → XP_040506663.1  mRNA export factor isoform X3

    UniProtKB/TrEMBL
    A0A8V0YQM5, A0A8V0YXB8
    Related
    ENSGALP00010020949.1, ENSGALT00010036074.1
    Conserved Domains (2) summary
    sd00039
    Location:91 → 133
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:89 → 384
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11767374..11776022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930830.1 → XP_046786786.1  mRNA export factor isoform X1

    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_046930829.1 → XP_046786785.1  mRNA export factor isoform X2

    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_046930828.1 → XP_046786784.1  mRNA export factor isoform X1

    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_046930833.1 → XP_046786789.1  mRNA export factor isoform X4

    UniProtKB/TrEMBL
    A0A8V0YQM5

  5. XM_046930832.1 → XP_046786788.1  mRNA export factor isoform X3

    UniProtKB/TrEMBL
    A0A8V0YQM5

  6. XM_046930831.1 → XP_046786787.1  mRNA export factor isoform X5

Nucleotide Protein Strain
Heading Accession and Version

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