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DPH1 diphthamide biosynthesis 1 [ Gallus gallus (chicken) ]

Gene ID: 417564, updated on 17-Aug-2024

Summary

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Symbol
DPH1provided by CGNC
Full Name
diphthamide biosynthesis 1provided by CGNC
Primary source
CGNC:2233
See related
Ensembl:ENSGALG00010029395
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (5981073..5995870)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5718048..5732906)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene replication protein A1 Neighboring gene reticulon 4 receptor like 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene microRNA mir-2184b Neighboring gene microRNA mir-2184a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-(3-amino-3-carboxypropyl)histidine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein histidyl modification to diphthamide IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-(3-amino-3-carboxypropyl)histidine synthase subunit 1
Names
S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase 1
diphthamide biosynthesis protein 1
diphtheria toxin resistance protein 1
NP_001025887.3
XP_015151241.2
XP_046786041.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030716.3 → NP_001025887.3  2-(3-amino-3-carboxypropyl)histidine synthase subunit 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/Swiss-Prot
    Q5ZHX9
    UniProtKB/TrEMBL
    A0A8V1AI30
    Related
    ENSGALP00010043792.1, ENSGALT00010071101.1
    Conserved Domains (1) summary
    TIGR00322
    Location:51 → 364
    diphth2_R; diphthamide biosynthesis enzyme Dph1/Dph2 domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5981073..5995870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015295755.4 → XP_015151241.2  2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX9
    UniProtKB/TrEMBL
    A0A8V1ANK6
    Related
    ENSGALP00010043791.1, ENSGALT00010071100.1
    Conserved Domains (1) summary
    TIGR00322
    Location:66 → 379
    diphth2_R; diphthamide biosynthesis enzyme Dph1/Dph2 domain

RNA

  1. XR_003071205.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5718048..5732906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930085.1 → XP_046786041.1  2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZHX9.1 GenPept UniProtKB/Swiss-Prot:Q5ZHX9

Gene LinkOut

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