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st3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 402789, updated on 17-Aug-2024

Summary

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Official Symbol
st3gal3provided by Xenbase
Official Full Name
ST3 beta-galactoside alpha-2,3-sialyltransferase 3provided by Xenbase
Primary source
Xenbase:XB-GENE-941048
See related
Ensembl:ENSXETG00000003486
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
st3n; siat6; st3galii; st3galiii
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (89695984..89836380)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (73764763..73906761, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type F Neighboring gene lysine (K)-specific demethylase 4A Neighboring gene artemin Neighboring gene importin 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC145269

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
Names
alpha-2,3-sialyltransferase ST3Gal III
NP_001016104.2
NP_989426.1
XP_012816230.1
XP_012816231.1
XP_012816232.1
XP_012816233.1
XP_012816234.1
XP_012816235.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016104.3 → NP_001016104.2  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform 2

    See identical proteins and their annotated locations for NP_001016104.2

    Status: PROVISIONAL

    Source sequence(s)
    BC121863
    UniProtKB/TrEMBL
    A0A6I8Q0F3, Q0P4X4
    Related
    ENSXETP00000060663.2, ENSXETT00000065884.3
    Conserved Domains (1) summary
    pfam00777
    Location:147 → 412
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. NM_204095.1 → NP_989426.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform 1

    See identical proteins and their annotated locations for NP_989426.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ626823
    UniProtKB/TrEMBL
    A0A6I8SMW7, Q702R6
    Conserved Domains (1) summary
    pfam00777
    Location:90 → 355
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    89695984..89836380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012960777.3 → XP_012816231.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q0F3, A0A8J0SKX6
    Conserved Domains (1) summary
    pfam00777
    Location:116 → 381
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_012960780.3 → XP_012816234.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A6I8SMW7, A0A8J0SKT6
    Conserved Domains (1) summary
    pfam00777
    Location:75 → 340
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_012960776.3 → XP_012816230.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q0F3, A0A6I8S7N4
    Related
    ENSXETP00000088713.1, ENSXETT00000072393.2
    Conserved Domains (1) summary
    pfam00777
    Location:131 → 396
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_012960781.3 → XP_012816235.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X6

    UniProtKB/TrEMBL
    A0A6I8SMW7, A0A8J0SJM2
    Conserved Domains (1) summary
    pfam00777
    Location:59 → 324
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_012960778.3 → XP_012816232.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X3

    See identical proteins and their annotated locations for XP_012816232.1

    UniProtKB/TrEMBL
    A0A6I8SMW7, A4IGP6, F7BUL5
    Related
    ENSXETP00000005508.4, ENSXETT00000005508.5
    Conserved Domains (1) summary
    pfam00777
    Location:106 → 371
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_012960779.3 → XP_012816233.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A6I8SMW7, F6Z9V9
    Related
    ENSXETP00000007545.5, ENSXETT00000007545.5
    Conserved Domains (1) summary
    pfam00777
    Location:90 → 355
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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