atp6v0c ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: atp6v0cprovided by Xenbase
Official Full Name: ATPase, H+ transporting, lysosomal 16kDa, V0 subunit cprovided by Xenbase
Primary source: Xenbase:XB-GENE-981790
See related: Ensembl:ENSXETG00000020284
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: atpl; vatl; vma3; atp6c; atp6l; xduct; ductin
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	9	NC_030685.2 (21842971..21852762, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	9	NC_030685.1 (15946756..15956817, complement)

Chromosome 9 - NC_030685.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables proton-transporting ATPase activity, rotational mechanism	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within proton transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in clathrin-coated vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of proton-transporting V-type ATPase, V0 domain	IEA Inferred from Electronic Annotation more info
located_in synaptic vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in vacuolar membrane	IEA Inferred from Electronic Annotation more info
located_in vacuole	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: V-type proton ATPase 16 kDa proteolipid subunit c

Names: ATPase, H+ transporting, V0 subunit C

NP_988893.1

EC 7.1.2.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203562.1 → NP_988893.1 V-type proton ATPase 16 kDa proteolipid subunit c

See identical proteins and their annotated locations for NP_988893.1

Status: PROVISIONAL

Source sequence(s)

BC059745

UniProtKB/TrEMBL

F6T8W1, Q6PBE9

Related

ENSXETP00000065806.1, ENSXETT00000079967.2

Conserved Domains (2) summary

TIGR01100
Location:14 → 119

V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit

cd18176
Location:87 → 154

ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins