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nrp1a neuropilin 1a [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117753852, updated on 19-Mar-2024

Summary

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Gene symbol
nrp1a
Gene description
neuropilin 1a
See related
EnsemblRapid:ENSHHIG00000004860
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 20 NC_047170.1 (4614001..4673988, complement)

Chromosome 20 - NC_047170.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117753699 Neighboring gene RAB18A, member RAS oncogene family Neighboring gene integrin, beta 1a Neighboring gene partitioning defective 3 homolog Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047170.1 Chromosome 20 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vascular endothelial growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuropilin-1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047170.1 Reference fHipHip1.pri Primary Assembly

    Range
    4614001..4673988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034572302.1 → XP_034428193.1  neuropilin-1a isoform X1

    Related
    ENSHHIP00000013805.1, ENSHHIT00000014109.1
    Conserved Domains (5) summary
    cd00041
    Location:145 → 262
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00057
    Location:276 → 421
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00431
    Location:25 → 136
    CUB; CUB domain
    pfam00629
    Location:645 → 810
    MAM; MAM domain, meprin/A5/mu
    pfam11980
    Location:846 → 924
    DUF3481; C-terminal domain of neuropilin glycoprotein

  2. XM_034572303.1 → XP_034428194.1  neuropilin-1a isoform X2

    Related
    ENSHHIP00000013806.1, ENSHHIT00000014110.1
    Conserved Domains (5) summary
    cd00041
    Location:145 → 262
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00057
    Location:276 → 421
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00431
    Location:25 → 136
    CUB; CUB domain
    pfam00629
    Location:638 → 803
    MAM; MAM domain, meprin/A5/mu
    pfam11980
    Location:839 → 917
    DUF3481; C-terminal domain of neuropilin glycoprotein
Nucleotide Protein
Heading Accession and Version

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