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NPAS2 neuronal PAS domain protein 2 [ Zalophus californianus (California sea lion) ]

Gene ID: 113937853, updated on 15-Mar-2024

Summary

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Gene symbol
NPAS2
Gene description
neuronal PAS domain protein 2
See related
EnsemblRapid:ENSZCAG00025018865
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See NPAS2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 8 NC_045602.1 (80412576..80563640)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020875357.1 (86357148..86508604)

Chromosome 8 - NC_045602.1Genomic Context describing neighboring genes Neighboring gene phosducin like 3 Neighboring gene pre-mRNA-splicing factor 38A-like Neighboring gene uncharacterized LOC113937854 Neighboring gene 40S ribosomal protein S3a-like Neighboring gene ribosomal protein L31 Neighboring gene TBC1 domain family member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045602.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    80412576..80563640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027622741.2 → XP_027478542.1  neuronal PAS domain-containing protein 2

    UniProtKB/TrEMBL
    A0A6J2FER3
    Related
    ENSZCAP00025029510.1, ENSZCAT00025033442.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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