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PICALM phosphatidylinositol binding clathrin assembly protein [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

Gene ID: 113607849, updated on 15-Mar-2024

Summary

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Gene symbol
PICALM
Gene description
phosphatidylinositol binding clathrin assembly protein
See related
EnsemblRapid:ENSLOBG00000020149
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagenorhynchus obliquidens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
Orthologs
human mouse all
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Genomic context

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See PICALM in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837994.1 (12286132..12392503, complement)

NW_020837994.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-like protein 2 Neighboring gene uncharacterized LOC113607845 Neighboring gene coiled-coil domain containing 83 Neighboring gene uncharacterized LOC113607850 Neighboring gene uncharacterized LOC113607878 Neighboring gene embryonic ectoderm development

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020837994 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367639v1 Primary Assembly

Genomic

  1. NW_020837994.1 Reference ASM367639v1 Primary Assembly

    Range
    12286132..12392503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027083590.1 → XP_026939391.1  phosphatidylinositol-binding clathrin assembly protein isoform X9

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  2. XM_027083582.1 → XP_026939383.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  3. XM_027083603.1 → XP_026939404.1  phosphatidylinositol-binding clathrin assembly protein isoform X21

    Conserved Domains (1) summary
    cl02544
    Location:20 → 149
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  4. XM_027083586.1 → XP_026939387.1  phosphatidylinositol-binding clathrin assembly protein isoform X7

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  5. XM_027083585.1 → XP_026939386.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  6. XM_027083581.1 → XP_026939382.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  7. XM_027083580.1 → XP_026939381.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  8. XM_027083584.1 → XP_026939385.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  9. XM_027083583.1 → XP_026939384.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  10. XM_027083594.1 → XP_026939395.1  phosphatidylinositol-binding clathrin assembly protein isoform X13

    Related
    ENSLOBP00000027266.1, ENSLOBT00000029858.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  11. XM_027083592.1 → XP_026939393.1  phosphatidylinositol-binding clathrin assembly protein isoform X11

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  12. XM_027083589.1 → XP_026939390.1  phosphatidylinositol-binding clathrin assembly protein isoform X8

    Related
    ENSLOBP00000027212.1, ENSLOBT00000029804.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  13. XM_027083595.1 → XP_026939396.1  phosphatidylinositol-binding clathrin assembly protein isoform X14

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  14. XM_027083593.1 → XP_026939394.1  phosphatidylinositol-binding clathrin assembly protein isoform X12

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  15. XM_027083591.1 → XP_026939392.1  phosphatidylinositol-binding clathrin assembly protein isoform X10

    Related
    ENSLOBP00000027238.1, ENSLOBT00000029830.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  16. XM_027083597.1 → XP_026939398.1  phosphatidylinositol-binding clathrin assembly protein isoform X16

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  17. XM_027083596.1 → XP_026939397.1  phosphatidylinositol-binding clathrin assembly protein isoform X15

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  18. XM_027083600.1 → XP_026939401.1  phosphatidylinositol-binding clathrin assembly protein isoform X18

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  19. XM_027083598.1 → XP_026939399.1  phosphatidylinositol-binding clathrin assembly protein isoform X17

    Related
    ENSLOBP00000027283.1, ENSLOBT00000029875.1
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  20. XM_027083601.1 → XP_026939402.1  phosphatidylinositol-binding clathrin assembly protein isoform X19

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  21. XM_027083602.1 → XP_026939403.1  phosphatidylinositol-binding clathrin assembly protein isoform X20

    Conserved Domains (2) summary
    COG4223
    Location:149 → 247
    COG4223; Uncharacterized conserved protein [Function unknown]
    cl02544
    Location:1 → 163
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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