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SOX5 SRY-box transcription factor 5 [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113419063, updated on 15-Mar-2024

Summary

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Gene symbol
SOX5
Gene description
SRY-box transcription factor 5
See related
Ensembl:ENSNSUG00000002195
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716709.1 (1236105..2091134)

NW_020716709.1Genomic Context describing neighboring genes Neighboring gene golgi transport 1B Neighboring gene branched chain amino acid transaminase 1 Neighboring gene small nucleolar RNA U3 Neighboring gene ethanolamine kinase 1 Neighboring gene C2 calcium dependent domain containing 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716709 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-5
Names
SRY-box 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716709.1 Reference TS10Xv2-PRI

    Range
    1236105..2091134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026678269.1 → XP_026534054.1  transcription factor SOX-5

    UniProtKB/TrEMBL
    A0A6J1V2I6
    Related
    ENSNSUP00000002831.1, ENSNSUT00000003056.1
Nucleotide Protein
Heading Accession and Version

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