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Plxnb2 plexin B2 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113200189, updated on 15-Mar-2024

Summary

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Gene symbol
Plxnb2
Gene description
plexin B2
See related
Ensembl:ENSUPAG00010005922
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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See Plxnb2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540477.1 (550234..576853, complement)

NW_020540477.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 12 Neighboring gene mitogen-activated protein kinase 11 Neighboring gene DENN domain containing 6B Neighboring gene 40S ribosomal protein S27-like Neighboring gene protein phosphatase 6 regulatory subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540477 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540477.1 Reference ASM342692v1

    Range
    550234..576853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026413542.1 → XP_026269327.1  plexin-B2

    UniProtKB/TrEMBL
    A0A8D2H668
    Conserved Domains (5) summary
    cd01180
    Location:807 → 898
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:472 → 520
    PSI; Plexin repeat
    pfam08337
    Location:1275 → 1809
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:899 → 985
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 470
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_026413541.1 → XP_026269326.1  plexin-B2

    UniProtKB/TrEMBL
    A0A8D2H668
    Conserved Domains (5) summary
    cd01180
    Location:807 → 898
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:472 → 520
    PSI; Plexin repeat
    pfam08337
    Location:1275 → 1809
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:899 → 985
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 470
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_026413544.1 → XP_026269329.1  plexin-B2

    UniProtKB/TrEMBL
    A0A8D2H668
    Conserved Domains (5) summary
    cd01180
    Location:807 → 898
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:472 → 520
    PSI; Plexin repeat
    pfam08337
    Location:1275 → 1809
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:899 → 985
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 470
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_026413543.1 → XP_026269328.1  plexin-B2

    UniProtKB/TrEMBL
    A0A8D2H668
    Conserved Domains (5) summary
    cd01180
    Location:807 → 898
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:472 → 520
    PSI; Plexin repeat
    pfam08337
    Location:1275 → 1809
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:899 → 985
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 470
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_026413545.1 → XP_026269330.1  plexin-B2

    UniProtKB/TrEMBL
    A0A8D2H668
    Related
    ENSUPAP00010007406.1, ENSUPAT00010008455.1
    Conserved Domains (5) summary
    cd01180
    Location:807 → 898
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:472 → 520
    PSI; Plexin repeat
    pfam08337
    Location:1275 → 1809
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:899 → 985
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 470
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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