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PPP1R13B protein phosphatase 1 regulatory subunit 13B [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112972660, updated on 15-Mar-2024

Summary

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Gene symbol
PPP1R13B
Gene description
protein phosphatase 1 regulatory subunit 13B
See related
Ensembl:ENSARWG00000014925
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450760.1 (633010..690749)

NW_020450760.1Genomic Context describing neighboring genes Neighboring gene tudor domain containing 9 Neighboring gene RD3 like Neighboring gene ATP synthase membrane subunit j Neighboring gene zinc finger FYVE-type containing 21 Neighboring gene X-ray repair cross complementing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450760 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables p53 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptosis-stimulating of p53 protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450760.1 Reference aptRow1

    Range
    633010..690749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026079495.1 → XP_025935280.1  apoptosis-stimulating of p53 protein 1 isoform X1

    Related
    ENSARWP00000022162.1, ENSARWT00000025112.1
    Conserved Domains (5) summary
    cd11954
    Location:1020 → 1076
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    cd00204
    Location:884 → 1007
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:890 → 916
    ANK; ANK repeat [structural motif]
    cl25732
    Location:69 → 311
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:447 → 800
    Atrophin-1; Atrophin-1 family

  2. XM_026079494.1 → XP_025935279.1  apoptosis-stimulating of p53 protein 1 isoform X1

    Conserved Domains (5) summary
    cd11954
    Location:1020 → 1076
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    cd00204
    Location:884 → 1007
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:890 → 916
    ANK; ANK repeat [structural motif]
    cl25732
    Location:69 → 311
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:447 → 800
    Atrophin-1; Atrophin-1 family

  3. XM_026079497.1 → XP_025935282.1  apoptosis-stimulating of p53 protein 1 isoform X2

    Related
    ENSARWP00000022128.1, ENSARWT00000025071.1
    Conserved Domains (5) summary
    cd11954
    Location:1012 → 1068
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    cd00204
    Location:876 → 999
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:882 → 908
    ANK; ANK repeat [structural motif]
    cl25742
    Location:146 → 320
    ERM; Ezrin/radixin/moesin family
    cl26464
    Location:439 → 792
    Atrophin-1; Atrophin-1 family

  4. XM_026079498.1 → XP_025935283.1  apoptosis-stimulating of p53 protein 1 isoform X3

    Conserved Domains (5) summary
    cd11954
    Location:893 → 949
    SH3_ASPP1; Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1
    cd00204
    Location:757 → 880
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:763 → 789
    ANK; ANK repeat [structural motif]
    cl25732
    Location:15 → 195
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:320 → 673
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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