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RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111935314, updated on 3-Aug-2024

Summary

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Gene symbol
RRP9
Gene description
ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
See related
Ensembl:ENSCCEG00000024209
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 12 Unlocalized Scaffold NW_019776483.1 (14653392..14660283, complement)

NW_019776483.1Genomic Context describing neighboring genes Neighboring gene testis expressed 264, ER-phagy receptor Neighboring gene uncharacterized LOC111935137 Neighboring gene glutamate metabotropic receptor 2 Neighboring gene 2'-5'-oligoadenylate synthase 1-like Neighboring gene hyaluronidase 3 Neighboring gene semaphorin 3B Neighboring gene solute carrier family 38 member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776483 Chromosome 12 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776483.1 Reference cyaCae2

    Range
    14653392..14660283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023935692.1 → XP_023791460.1  U3 small nucleolar RNA-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C0VXW5
    Related
    ENSCCEP00000027836.1, ENSCCET00000041181.1
    Conserved Domains (2) summary
    cd00200
    Location:84 → 384
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:94 → 142
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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