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SP5 Sp5 transcription factor [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111172849, updated on 15-Mar-2024

Summary

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Gene symbol
SP5
Gene description
Sp5 transcription factor
See related
Ensembl:ENSDLEG00000017752
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See SP5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098076.1 (33908734..33915812)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160862.1 (33916614..33923692)

NW_022098076.1Genomic Context describing neighboring genes Neighboring gene myosin IIIB Neighboring gene 60S ribosomal protein L39 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L31 pseudogene Neighboring gene glutamate rich 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098076.1 Reference ASM228892v3 Primary Assembly

    Range
    33908734..33915812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022570017.1 → XP_022425725.1  transcription factor Sp5 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9MTK4
    Conserved Domains (5) summary
    COG5048
    Location:311 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:342 → 365
    zf-H2C2_2; Zinc-finger double domain
    cd22541
    Location:106 → 297
    SP5_N; N-terminal domain of transcription factor Specificity Protein (SP) 5
    cl41773
    Location:31 → 59
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_022570016.1 → XP_022425724.1  transcription factor Sp5 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9MTK4
    Conserved Domains (5) summary
    COG5048
    Location:311 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:342 → 365
    zf-H2C2_2; Zinc-finger double domain
    cd22541
    Location:106 → 297
    SP5_N; N-terminal domain of transcription factor Specificity Protein (SP) 5
    cl41773
    Location:31 → 59
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_030760461.1 → XP_030616321.1  transcription factor Sp5 isoform X2

    UniProtKB/TrEMBL
    A0A7F8K1R4
    Conserved Domains (4) summary
    COG5048
    Location:235 → 308
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:225 → 244
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:266 → 289
    zf-H2C2_2; Zinc-finger double domain
    cd22541
    Location:30 → 221
    SP5_N; N-terminal domain of transcription factor Specificity Protein (SP) 5

  4. XM_030760460.1 → XP_030616320.1  transcription factor Sp5 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9MTK4
    Related
    ENSDLEP00000024460.1, ENSDLET00000026917.1
    Conserved Domains (5) summary
    COG5048
    Location:311 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:342 → 365
    zf-H2C2_2; Zinc-finger double domain
    cd22541
    Location:106 → 297
    SP5_N; N-terminal domain of transcription factor Specificity Protein (SP) 5
    cl41773
    Location:31 → 59
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
Heading Accession and Version

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