These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001204076.1 → NP_001191005.1 katanin p60 ATPase-containing subunit A1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks two alternate in-frame exons in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
- Source sequence(s)
-
BC050428, DB031858
- Consensus CDS
-
CCDS56456.1
- UniProtKB/Swiss-Prot
-
O75449
- Related
- ENSP00000335180, OTTHUMP00000042860, ENST00000335643, OTTHUMT00000105344
- Conserved Domains (2) summary
-
- cd00009
Location:167 – 305
Blast Score: 250
- AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
- smart00382
Location:167 – 306
Blast Score: 194
- AAA; ATPases associated with a variety of cellular activities
-
NM_007044.3 → NP_008975.1 katanin p60 ATPase-containing subunit A1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK292090, BC050428, CA426364, DB031858
- Consensus CDS
-
CCDS5217.1
- UniProtKB/TrEMBL
-
A8K7S5
- UniProtKB/Swiss-Prot
-
O75449
- Related
- ENSP00000356381, ENST00000367411
- Conserved Domains (4) summary
-
- cd00009
Location:239 – 381
Blast Score: 255
- AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
- PRK04195
Location:209 – 265
Blast Score: 96
- PRK04195; replication factor C large subunit; Provisional
- smart00382
Location:241 – 382
Blast Score: 194
- AAA; ATPases associated with a variety of cellular activities
- pfam09336
Location:456 – 489
Blast Score: 113
- Vps4_C; Vps4 C terminal oligomerisation domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000006.11 Reference GRCh37.p5 Primary Assembly
- Range
- 149916009..149969940, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000138.1 Alternate HuRef
- Range
- 147482647..147536579, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)