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Nup35 nucleoporin 35 [ Mus pahari (shrew mouse) ]

Gene ID: 110318367, updated on 15-Mar-2024

Summary

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Gene symbol
Nup35
Gene description
nucleoporin 35
See related
Ensembl:MGP_PahariEiJ_G0025160
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Nup35 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 3 NC_034592.1 (66483282..66506072)

Chromosome 3 - NC_034592.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15 pseudogene Neighboring gene dual specificity phosphatase 19 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene 60S ribosomal protein L13a pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034592.1 Chromosome 3 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear pore organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore central transport channel IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore nuclear basket IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin NUP35

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034592.1 Reference PAHARI_EIJ_v1.1

    Range
    66483282..66506072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021193362.1 → XP_021049021.1  nucleoporin NUP35 isoform X1

    Related
    MGP_PahariEiJ_P0063538, MGP_PahariEiJ_T0063538.1
    Conserved Domains (2) summary
    cd12722
    Location:171 → 244
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
    cl00779
    Location:130 → 210
    NQR2_RnfD_RnfE; NQR2, RnfD, RnfE family

  2. XM_021193363.1 → XP_021049022.1  nucleoporin NUP35 isoform X2

    Conserved Domains (3) summary
    cd12722
    Location:154 → 227
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
    pfam05109
    Location:5 → 139
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl00779
    Location:113 → 193
    NQR2_RnfD_RnfE; NQR2, RnfD, RnfE family
Nucleotide Protein
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