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NUP35 nucleoporin 35 [ Homo sapiens (human) ]

Gene ID: 129401, updated on 21-Dec-2019

Summary

Official Symbol
NUP35provided by HGNC
Official Full Name
nucleoporin 35provided by HGNC
Primary source
HGNC:HGNC:29797
See related
Ensembl:ENSG00000163002 MIM:608140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MP44; NP44; MP-44; NUP53
Summary
This gene encodes a member of the nucleoporin family. The encoded protein contains two membrane binding regions, is localized to the nuclear rim, and is part of the nuclear pore complex. All molecules entering or leaving the nucleus either diffuse through or are actively transported by the nuclear pore complex. Alternative splicing results in multiple transcript variants. Pseudogenes of this gene have been defined on chromosomes 7 and 10. [provided by RefSeq, Dec 2013]
Expression
Ubiquitous expression in testis (RPKM 6.9), adrenal (RPKM 3.5) and 25 other tissues See more
Orthologs

Genomic context

See NUP35 in Genome Data Viewer
Location:
2q32.1
Exon count:
14
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (183117480..183161684)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (183982247..184026408)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene keratin 8 pseudogene 10 Neighboring gene dual specificity phosphatase 19 Neighboring gene uncharacterized LOC105373774 Neighboring gene LIN28A pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
NLS-bearing protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to leukemia inhibitory factor IEA
Inferred from Electronic Annotation
more info
 
intracellular transport of virus TAS
Traceable Author Statement
more info
 
mRNA export from nucleus TAS
Traceable Author Statement
more info
 
nuclear pore organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein sumoylation TAS
Traceable Author Statement
more info
 
regulation of cellular response to heat TAS
Traceable Author Statement
more info
 
regulation of gene silencing by miRNA TAS
Traceable Author Statement
more info
 
regulation of glycolytic process TAS
Traceable Author Statement
more info
 
tRNA export from nucleus TAS
Traceable Author Statement
more info
 
viral process TAS
Traceable Author Statement
more info
 
viral transcription TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
host cell IEA
Inferred from Electronic Annotation
more info
 
nuclear envelope TAS
Traceable Author Statement
more info
 
nuclear lamina IEA
Inferred from Electronic Annotation
more info
 
nuclear membrane IDA
Inferred from Direct Assay
more info
 
nuclear pore central transport channel IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear pore nuclear basket IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nucleoporin NUP35
Names
mitotic phosphoprotein 44
nuclear pore complex protein Nup53
nucleoporin 35kDa
nucleoporin NUP53

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287584.1NP_001274513.1  nucleoporin NUP35 isoform b

    See identical proteins and their annotated locations for NP_001274513.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in its 5' UTR, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AC064871, AK302350, BC035597, FN117342, HY031440
    Consensus CDS
    CCDS74614.1
    UniProtKB/Swiss-Prot
    Q8NFH5
    Related
    ENSP00000387305.1, ENST00000409798.5
    Conserved Domains (1) summary
    cd12722
    Location:155228
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
  2. NM_001287585.1NP_001274514.1  nucleoporin NUP35 isoform c

    See identical proteins and their annotated locations for NP_001274514.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in its 5' UTR, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (c) has a shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AF411516, AK298199, BC061698, BI818393, CX787176, FN117342
    UniProtKB/Swiss-Prot
    Q8NFH5
    Conserved Domains (2) summary
    cd12722
    Location:54127
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
    cl00779
    Location:1393
    NQR2_RnfD_RnfE; NQR2, RnfD, RnfE family
  3. NM_138285.5NP_612142.2  nucleoporin NUP35 isoform a

    See identical proteins and their annotated locations for NP_612142.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    BC061698, FN117342
    Consensus CDS
    CCDS2290.1
    UniProtKB/Swiss-Prot
    Q8NFH5
    Related
    ENSP00000295119.4, ENST00000295119.9
    Conserved Domains (1) summary
    cd12722
    Location:172245
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53

RNA

  1. NR_109856.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AF411516, AK289601, BC035597, BI818393, FN117342

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    183117480..183161684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011510576.3XP_011508878.1  nucleoporin NUP35 isoform X2

    See identical proteins and their annotated locations for XP_011508878.1

    UniProtKB/Swiss-Prot
    Q8NFH5
    Conserved Domains (1) summary
    cd12722
    Location:155228
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
  2. XM_006712254.3XP_006712317.1  nucleoporin NUP35 isoform X2

    See identical proteins and their annotated locations for XP_006712317.1

    UniProtKB/Swiss-Prot
    Q8NFH5
    Conserved Domains (1) summary
    cd12722
    Location:155228
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
  3. XM_011510577.2XP_011508879.1  nucleoporin NUP35 isoform X2

    See identical proteins and their annotated locations for XP_011508879.1

    UniProtKB/Swiss-Prot
    Q8NFH5
    Conserved Domains (1) summary
    cd12722
    Location:155228
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53
  4. XM_017003308.1XP_016858797.1  nucleoporin NUP35 isoform X1

    Conserved Domains (1) summary
    cd12722
    Location:175248
    RRM_Nup53; RNA recognition motif in nucleoporin Nup53

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008544.1: Suppressed sequence

    Description
    NM_001008544.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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