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Arih1 ariadne RBR E3 ubiquitin protein ligase 1 [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110301233, updated on 15-Mar-2024

Summary

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Gene symbol
Arih1
Gene description
ariadne RBR E3 ubiquitin protein ligase 1
See related
Ensembl:MGP_CAROLIEiJ_G0032302
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 9 NC_034578.1 (56584251..56681325, complement)

Chromosome 9 - NC_034578.1Genomic Context describing neighboring genes Neighboring gene ADP dependent glucokinase Neighboring gene Bardet-Biedl syndrome 4 Neighboring gene transmembrane protein 202 Neighboring gene hexosaminidase subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034578.1 Chromosome 9 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase ARIH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034578.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    56584251..56681325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021171586.2 → XP_021027245.1  E3 ubiquitin-protein ligase ARIH1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QH79
    Related
    MGP_CAROLIEiJ_P0088141, MGP_CAROLIEiJ_T0088141.1
    Conserved Domains (3) summary
    smart00647
    Location:255 → 315
    IBR; In Between Ring fingers
    cd16626
    Location:183 → 240
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:337 → 377
    IBR; IBR domain, a half RING-finger domain

  2. XM_029481142.1 → XP_029337002.1  E3 ubiquitin-protein ligase ARIH1 isoform X2

    UniProtKB/TrEMBL
    A0A6P7R8P5
    Conserved Domains (3) summary
    smart00647
    Location:165 → 225
    IBR; In Between Ring fingers
    cd16626
    Location:93 → 150
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:247 → 287
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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