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MEX3B mex-3 RNA binding family member B [ Sus scrofa (pig) ]

Gene ID: 110261545, updated on 17-Aug-2024

Summary

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Official Symbol
MEX3Bprovided by VGNC
Official Full Name
mex-3 RNA binding family member Bprovided by VGNC
Primary source
VGNC:VGNC:90169
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 2.1), ovary (RPKM 2.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (50747828..50753119, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene Neighboring gene 60S ribosomal protein L35a-like Neighboring gene elongation factor like GTPase 1 Neighboring gene stabilizer of axonemal microtubules 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010449.5 Chromosome 7 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein MEX3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    50747828..50753119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021098869.1 → XP_020954528.1  RNA-binding protein MEX3B isoform X2

    UniProtKB/TrEMBL
    A0A287B7R5, A0A8D0NJP6
    Conserved Domains (3) summary
    smart00322
    Location:95 → 160
    KH; K homology RNA-binding domain
    cd00105
    Location:2 → 62
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd16721
    Location:449 → 491
    RING-HC_MEX3B; RING finger, HC subclass, found in RNA-binding protein MEX3B

  2. XM_021098868.1 → XP_020954527.1  RNA-binding protein MEX3B isoform X1

    UniProtKB/TrEMBL
    A0A480JWP6, A0A4X1UQ35, A0A8D1SV37
    Conserved Domains (3) summary
    smart00322
    Location:169 → 234
    KH; K homology RNA-binding domain
    cd00105
    Location:76 → 136
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd16721
    Location:523 → 565
    RING-HC_MEX3B; RING finger, HC subclass, found in RNA-binding protein MEX3B
Nucleotide Protein
Heading Accession and Version

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