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Zfc3h1 zinc finger C3H1-type containing [ Castor canadensis (American beaver) ]

Gene ID: 109696107, updated on 14-Mar-2024

Summary

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Gene symbol
Zfc3h1
Gene description
zinc finger C3H1-type containing
See related
Ensembl:ENSCCNG00000018192
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017871773.1 (149287..220479, complement)

NW_017871773.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing G protein-coupled receptor 5 Neighboring gene THAP domain containing 2 Neighboring gene transmembrane protein 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017871773.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger C3H1 domain-containing protein
Names
proline/serine-rich coiled-coil 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017871773.1 Reference C.can genome v1.0

    Range
    149287..220479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020178987.1 → XP_020034576.1  zinc finger C3H1 domain-containing protein

    UniProtKB/TrEMBL
    A0A250Y858, A0A8C0X4T1
    Related
    ENSCCNP00000017920.1, ENSCCNT00000023335.1
    Conserved Domains (6) summary
    COG0457
    Location:1384 → 1667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1605 → 1631
    TPR; TPR repeat [structural motif]
    pfam10650
    Location:1186 → 1206
    zf-C3H1; Putative zinc-finger domain
    pfam13428
    Location:1362 → 1411
    TPR_14; Tetratricopeptide repeat
    cl25732
    Location:726 → 1050
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28296
    Location:1348 → 1453
    NrfG; Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]

RNA

  1. XR_002213285.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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