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ZFC3H1 zinc finger C3H1-type containing [ Homo sapiens (human) ]

Gene ID: 196441, updated on 12-Oct-2019

Summary

Official Symbol
ZFC3H1provided by HGNC
Official Full Name
zinc finger C3H1-type containingprovided by HGNC
Primary source
HGNC:HGNC:28328
See related
Ensembl:ENSG00000133858
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSRC2; PSRC2; CCDC131
Expression
Ubiquitous expression in lymph node (RPKM 12.9), testis (RPKM 11.4) and 25 other tissues See more
Orthologs

Genomic context

See ZFC3H1 in Genome Data Viewer
Location:
12q21.1
Exon count:
35
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (71609599..71663848, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (72003379..72057749, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369832 Neighboring gene leucine rich repeat containing G protein-coupled receptor 5 Neighboring gene uncharacterized LOC105369833 Neighboring gene uncharacterized LOC107984529 Neighboring gene THAP domain containing 2 Neighboring gene transmembrane protein 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0546, MGC23401, MGC90200, DKFZp686A0722

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
exosome (RNase complex) IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space HDA PubMed 
NOT nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc finger C3H1 domain-containing protein
Names
coiled-coil domain containing 131
coiled-coil domain-containing protein 131
proline/serine-rich coiled-coil 2
proline/serine-rich coiled-coil protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144982.5NP_659419.3  zinc finger C3H1 domain-containing protein

    See identical proteins and their annotated locations for NP_659419.3

    Status: VALIDATED

    Source sequence(s)
    AB011118, AC073612, BX647709
    Consensus CDS
    CCDS41813.1
    UniProtKB/Swiss-Prot
    O60293
    Related
    ENSP00000368017.3, ENST00000378743.8
    Conserved Domains (5) summary
    COG0457
    Location:13831667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:16041630
    TPR; TPR repeat [structural motif]
    pfam10650
    Location:11861204
    zf-C3H1; Putative zinc-finger domain
    pfam13414
    Location:13621432
    TPR_11; TPR repeat
    pfam13428
    Location:13611410
    TPR_14; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    71609599..71663848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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