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Zbtb17 zinc finger and BTB domain containing 17 [ Castor canadensis (American beaver) ]

Gene ID: 109692558, updated on 14-Mar-2024

Summary

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Gene symbol
Zbtb17
Gene description
zinc finger and BTB domain containing 17
See related
Ensembl:ENSCCNG00000009303
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017871252.1 (72166..102872)

NW_017871252.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family B (small) member 7 Neighboring gene steroid receptor associated and regulated protein Neighboring gene spen family transcriptional repressor Neighboring gene 60S ribosomal protein L36a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017871252.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017871252.1 Reference C.can genome v1.0

    Range
    72166..102872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020173217.1 → XP_020028806.1  zinc finger and BTB domain-containing protein 17

    UniProtKB/TrEMBL
    A0A250YL89
    Related
    ENSCCNP00000008818.1, ENSCCNT00000011615.1
    Conserved Domains (5) summary
    COG5048
    Location:294 → 625
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:464 → 484
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:604 → 623
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 109
    BTB; BTB/POZ domain
    pfam15724
    Location:38 → 245
    TMEM119; TMEM119 family

  2. XM_020173218.1 → XP_020028807.1  zinc finger and BTB domain-containing protein 17

    UniProtKB/TrEMBL
    A0A250YL89
    Conserved Domains (5) summary
    COG5048
    Location:294 → 625
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:464 → 484
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:604 → 623
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 109
    BTB; BTB/POZ domain
    pfam15724
    Location:38 → 245
    TMEM119; TMEM119 family
Nucleotide Protein
Heading Accession and Version

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