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Atg2a autophagy related 2A [ Castor canadensis (American beaver) ]

Gene ID: 109687168, updated on 14-Mar-2024

Summary

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Gene symbol
Atg2a
Gene description
autophagy related 2A
See related
Ensembl:ENSCCNG00000024989
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Atg2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870562.1 (3194726..3215671)

NW_017870562.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B'beta Neighboring gene glycoprotein hormone subunit alpha 2 Neighboring gene EH domain containing 1 Neighboring gene CDC42 binding protein kinase gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870562.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 2 homolog A
Names
autophagy-related protein 2 A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870562.1 Reference C.can genome v1.0

    Range
    3194726..3215671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020164943.1 → XP_020020532.1  autophagy-related protein 2 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A250Y857, A0A8B7UMG7
    Conserved Domains (3) summary
    pfam09333
    Location:1831 → 1924
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:14 → 109
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1112 → 1244
    ATG2_CAD; Autophagy-related protein 2 CAD motif

  2. XM_020164944.1 → XP_020020533.1  autophagy-related protein 2 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A250Y857, A0A8B7ULT4
    Related
    ENSCCNP00000025679.1, ENSCCNT00000032629.1
    Conserved Domains (3) summary
    pfam09333
    Location:1829 → 1922
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:14 → 109
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1112 → 1244
    ATG2_CAD; Autophagy-related protein 2 CAD motif

  3. XM_020164941.1 → XP_020020530.1  autophagy-related protein 2 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A250Y857, A0A8B7UQQ2
    Conserved Domains (3) summary
    pfam09333
    Location:1843 → 1936
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:73 → 121
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1124 → 1256
    ATG2_CAD; Autophagy-related protein 2 CAD motif

  4. XM_020164942.1 → XP_020020531.1  autophagy-related protein 2 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A250Y857, A0A8B7ULP4
    Conserved Domains (3) summary
    pfam09333
    Location:1841 → 1934
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:73 → 121
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:1124 → 1256
    ATG2_CAD; Autophagy-related protein 2 CAD motif
Nucleotide Protein
Heading Accession and Version

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