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REXO1 RNA exonuclease 1 homolog [ Bos indicus (zebu cattle) ]

Gene ID: 109561998, updated on 14-Mar-2024

Summary

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Gene symbol
REXO1
Gene description
RNA exonuclease 1 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 7 NC_032656.1 (43831532..43850706, complement)

Chromosome 7 - NC_032656.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L18 pseudogene Neighboring gene ATPase phospholipid transporting 8B3 Neighboring gene KLF transcription factor 16 Neighboring gene abhydrolase domain containing 17A, depalmitoylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032656.1 Chromosome 7 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA exonuclease 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032656.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    43831532..43850706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019964890.1 → XP_019820449.1  RNA exonuclease 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P5C4E4
    Conserved Domains (5) summary
    cd06145
    Location:1051 → 1141
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    pfam15870
    Location:792 → 952
    EloA-BP1; ElonginA binding-protein 1
    cl26386
    Location:241 → 458
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:20 → 537
    Atrophin-1; Atrophin-1 family
    cl27057
    Location:362 → 491
    ADK; Adenylate kinase

  2. XM_019964892.1 → XP_019820451.1  RNA exonuclease 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A6P5C4C6
    Conserved Domains (3) summary
    cd06145
    Location:1051 → 1199
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    pfam15870
    Location:792 → 952
    EloA-BP1; ElonginA binding-protein 1
    cl26464
    Location:20 → 537
    Atrophin-1; Atrophin-1 family

  3. XM_019964891.1 → XP_019820450.1  RNA exonuclease 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6P5C4F2
    Conserved Domains (3) summary
    pfam15870
    Location:792 → 952
    EloA-BP1; ElonginA binding-protein 1
    cl26386
    Location:241 → 458
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl28033
    Location:386 → 538
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

RNA

  1. XR_002181117.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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