U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

scube2 signal peptide, CUB domain, EGF-like 2 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109525841, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
scube2
Gene description
signal peptide, CUB domain, EGF-like 2
See related
Ensembl:ENSHCOG00000002173
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805824.1 (2580066..2615964)

NW_017805824.1Genomic Context describing neighboring genes Neighboring gene DENN domain-containing protein 5A-like Neighboring gene SIN3-HDAC complex associated factor, like Neighboring gene TMEM9 domain family, member B Neighboring gene DENN domain containing 2B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017805824.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 2
Names
signal peptide, CUB domain and EGF like domain containing 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805824.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    2580066..2615964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019886645.1 → XP_019742204.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3D311, A0A3Q3D317
    Related
    ENSHCOP00000001234.1, ENSHCOT00000012449.1
    Conserved Domains (6) summary
    smart00179
    Location:348 → 378
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:833 → 944
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:781 → 828
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12662
    Location:93 → 115
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:33 → 68
    EGF_3; EGF domain
    pfam14670
    Location:116 → 151
    FXa_inhibition; Coagulation Factor Xa inhibitory site

  2. XM_019886648.1 → XP_019742207.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3D311
    Conserved Domains (6) summary
    smart00179
    Location:348 → 378
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:832 → 943
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:780 → 827
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12662
    Location:93 → 115
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:33 → 68
    EGF_3; EGF domain
    pfam14670
    Location:116 → 151
    FXa_inhibition; Coagulation Factor Xa inhibitory site

  3. XM_019886649.1 → XP_019742208.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q3D311
    Conserved Domains (6) summary
    smart00179
    Location:348 → 378
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:667 → 778
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:615 → 662
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12662
    Location:93 → 115
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:33 → 68
    EGF_3; EGF domain
    pfam14670
    Location:116 → 151
    FXa_inhibition; Coagulation Factor Xa inhibitory site

  4. XM_019886647.1 → XP_019742206.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3D311
    Related
    ENSHCOP00000001219.1, ENSHCOT00000012469.1
    Conserved Domains (6) summary
    smart00179
    Location:347 → 377
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:832 → 943
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:780 → 827
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam12662
    Location:92 → 114
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:32 → 67
    EGF_3; EGF domain
    pfam14670
    Location:115 → 150
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.