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trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit [ Lates calcarifer (barramundi perch) ]

Gene ID: 108888022, updated on 10-Apr-2024

Summary

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Gene symbol
trmt10c
Gene description
tRNA methyltransferase 10C, mitochondrial RNase P subunit
See related
EnsemblRapid:ENSLCAG00010010318
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG2
Exon count:
1
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG2 NC_066834.1 (4629463..4631362)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364165.1 (7671131..7673041, complement)

Linkage Group LG2 - NC_066834.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene tyrosinase Neighboring gene thioredoxin-like 4B Neighboring gene basic leucine zipper nuclear factor 1 Neighboring gene uncharacterized LOC127143068 Neighboring gene excision repair cross-complementation group 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial tRNA 5'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA methyltransferase 10 homolog C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066834.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4629463..4631362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018683823.2 → XP_018539339.1  tRNA methyltransferase 10 homolog C

    UniProtKB/TrEMBL
    A0A4W6DAZ3
    Related
    ENSLCAP00010021900.2, ENSLCAT00010022372.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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