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GPC1 glypican 1 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108507272, updated on 3-Aug-2024

Summary

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Gene symbol
GPC1
Gene description
glypican 1
See related
Ensembl:ENSLCOG00000005303
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690428.1 (716804..920634)

NW_016690428.1Genomic Context describing neighboring genes Neighboring gene glypican-5-like Neighboring gene otospiralin Neighboring gene uncharacterized LOC108507277 Neighboring gene claudin-15-like Neighboring gene dual specificity phosphatase 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690428.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fibroblast growth factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690428.1 Reference Lepidothrix_coronata-1.0

    Range
    716804..920634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017835099.1 → XP_017690588.1  glypican-1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0IVD1
    Related
    ENSLCOP00000007203.1, ENSLCOT00000007676.1

  2. XM_017835101.1 → XP_017690590.1  glypican-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IX30

  3. XM_017835102.1 → XP_017690591.1  glypican-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IX30

  4. XM_017835100.1 → XP_017690589.1  glypican-1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0IX30
Nucleotide Protein
Heading Accession and Version

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