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RC3H2 ring finger and CCCH-type domains 2 [ Lepidothrix coronata (blue-crowned manakin) ]

Gene ID: 108495030, updated on 3-Aug-2024

Summary

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Gene symbol
RC3H2
Gene description
ring finger and CCCH-type domains 2
See related
Ensembl:ENSLCOG00000014258
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepidothrix coronata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Lepidothrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Lepidothrix_coronata-1.0 (GCF_001604755.1) Unplaced Scaffold NW_016690208.1 (5744934..5771159, complement)

NW_016690208.1Genomic Context describing neighboring genes Neighboring gene prostaglandin-endoperoxide synthase 1 Neighboring gene phosducin like Neighboring gene RAB GTPase activating protein 1 Neighboring gene zinc finger and BTB domain containing 6 Neighboring gene zinc finger and BTB domain containing 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016690208.1 Unplaced Scaffold Reference Lepidothrix_coronata-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
roquin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepidothrix coronata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lepidothrix_coronata-1.0

Genomic

  1. NW_016690208.1 Reference Lepidothrix_coronata-1.0

    Range
    5744934..5771159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017810250.1 → XP_017665739.1  roquin-2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0GVU1
    Related
    ENSLCOP00000020127.1, ENSLCOT00000021276.1

  2. XM_017810249.1 → XP_017665738.1  roquin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0GU80
    Related
    ENSLCOP00000020126.1, ENSLCOT00000021275.1
    Conserved Domains (3) summary
    pfam00642
    Location:411 → 437
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam03957
    Location:544 → 635
    Jun; Jun-like transcription factor
    pfam14634
    Location:14 → 55
    zf-RING_5; zinc-RING finger domain

  3. XM_017810251.1 → XP_017665740.1  roquin-2 isoform X3

    UniProtKB/TrEMBL
    A0A6J0GVA3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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