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ZSCAN20 zinc finger and SCAN domain containing 20 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108401822, updated on 14-Mar-2024

Summary

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Gene symbol
ZSCAN20
Gene description
zinc finger and SCAN domain containing 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See ZSCAN20 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435962.1 (9531531..9551923, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016536785.1 (536468..556855)

NW_023435962.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108398485 Neighboring gene chromosome unknown C1orf94 homolog Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene toll-like receptor 12 Neighboring gene polyhomeotic homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023435962.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    9531531..9551923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017668005.2 → XP_017523494.2  zinc finger and SCAN domain-containing protein 20 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:704 → 1036
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:745 → 765
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:47 → 132
    SCAN; SCAN domain
    pfam13837
    Location:326 → 407
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. XM_017668001.2 → XP_017523490.2  zinc finger and SCAN domain-containing protein 20 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:705 → 1037
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:746 → 766
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:47 → 132
    SCAN; SCAN domain
    pfam13837
    Location:326 → 407
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  3. XM_017668003.2 → XP_017523492.2  zinc finger and SCAN domain-containing protein 20 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:705 → 1037
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:746 → 766
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:47 → 132
    SCAN; SCAN domain
    pfam13837
    Location:326 → 407
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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