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Zscan20 zinc finger and SCAN domains 20 [ Mus musculus (house mouse) ]

Gene ID: 269585, updated on 5-Mar-2024

Summary

Official Symbol
Zscan20provided by MGI
Official Full Name
zinc finger and SCAN domains 20provided by MGI
Primary source
MGI:MGI:2679268
See related
Ensembl:ENSMUSG00000061894 AllianceGenome:MGI:2679268
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp31; Zkscan20; C130001F22
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including cerebral cortex; early conceptus; ganglia; genitourinary system; and lung. Orthologous to human ZSCAN20 (zinc finger and SCAN domain containing 20). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 1.4), thymus adult (RPKM 1.2) and 28 other tissues See more
Orthologs
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Genomic context

See Zscan20 in Genome Data Viewer
Location:
4 D2.2; 4 62.04 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (128472142..128503933, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (128578670..128610153, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene high-mobility group box 4, opposite strand Neighboring gene STARR-seq mESC enhancer starr_11453 Neighboring gene predicted gene, 33656 Neighboring gene STARR-positive B cell enhancer ABC_E839 Neighboring gene STARR-seq mESC enhancer starr_11454 Neighboring gene predicted gene 12958 Neighboring gene toll-like receptor 12

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC30798

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 20
Names
zinc finger protein 31
zinc finger with KRAB and SCAN domains 20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177758.4NP_808426.2  zinc finger and SCAN domain-containing protein 20

    See identical proteins and their annotated locations for NP_808426.2

    Status: VALIDATED

    Source sequence(s)
    AK144249, BC065079, BC076602
    Consensus CDS
    CCDS18672.2
    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Related
    ENSMUSP00000095487.3, ENSMUST00000097877.9
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    128472142..128503933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240544.4XP_011238846.1  zinc finger and SCAN domain-containing protein 20 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:6851019
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:947967
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:315396
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  2. XM_036164141.1XP_036020034.1  zinc finger and SCAN domain-containing protein 20 isoform X6

    Conserved Domains (3) summary
    COG5048
    Location:256590
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:518538
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:46127
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  3. XM_036164140.1XP_036020033.1  zinc finger and SCAN domain-containing protein 20 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:6851019
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:947967
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:315396
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  4. XM_011240545.4XP_011238847.1  zinc finger and SCAN domain-containing protein 20 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:657991
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:919939
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:447532
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02605
    Location:29104
    SCAN; SCAN oligomerization domain
  5. XM_011240542.4XP_011238844.1  zinc finger and SCAN domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_011238844.1

    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  6. XM_011240543.4XP_011238845.1  zinc finger and SCAN domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_011238845.1

    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  7. XM_011240546.4XP_011238848.1  zinc finger and SCAN domain-containing protein 20 isoform X4

    See identical proteins and their annotated locations for XP_011238848.1

    Conserved Domains (3) summary
    COG5048
    Location:505839
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:767787
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:295380
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  8. XM_011240547.4XP_011238849.1  zinc finger and SCAN domain-containing protein 20 isoform X5

    See identical proteins and their annotated locations for XP_011238849.1

    UniProtKB/Swiss-Prot
    B2KFW1
    Conserved Domains (3) summary
    COG5048
    Location:257591
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:519539
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:47132
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  9. XM_006503133.4XP_006503196.1  zinc finger and SCAN domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_006503196.1

    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  10. XM_006503131.3XP_006503194.1  zinc finger and SCAN domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_006503194.1

    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
  11. XM_006503134.4XP_006503197.1  zinc finger and SCAN domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_006503197.1

    UniProtKB/Swiss-Prot
    B1AS93, B2KFW1, Q3UNF0, Q6DFW6, Q8BJ07
    Conserved Domains (4) summary
    COG5048
    Location:6861020
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:948968
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:41126
    SCAN; SCAN domain
    pfam13837
    Location:476561
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain