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SIN3A SIN3 transcription regulator family member A [ Manis javanica (Malayan pangolin) ]

Gene ID: 108392775, updated on 14-Mar-2024

Summary

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Gene symbol
SIN3A
Gene description
SIN3 transcription regulator family member A
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435959.1 (9344601..9410959, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016530112.1 (48108..113661)

NW_023435959.1Genomic Context describing neighboring genes Neighboring gene endonuclease 8-like 1 Neighboring gene endonuclease 8-like 1 Neighboring gene mannosidase alpha class 2C member 1 Neighboring gene protein tyrosine phosphatase non-receptor type 9 Neighboring gene snurportin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired amphipathic helix protein Sin3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023435959.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    9344601..9410959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017653232.2 → XP_017508721.2  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_037010194.1 → XP_036866089.1  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_037010191.1 → XP_036866086.1  paired amphipathic helix protein Sin3a isoform X2

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  4. XM_017653229.2 → XP_017508718.2  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  5. XM_017653231.2 → XP_017508720.2  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  6. XM_037010193.1 → XP_036866088.1  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  7. XM_037010192.1 → XP_036866087.1  paired amphipathic helix protein Sin3a isoform X1

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  8. XM_037010195.1 → XP_036866090.1  paired amphipathic helix protein Sin3a isoform X3

    Conserved Domains (1) summary
    COG5602
    Location:1 → 1064
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
Nucleotide Protein
Heading Accession and Version

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