U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CLASP1 cytoplasmic linker associated protein 1 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108383788, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CLASP1
Gene description
cytoplasmic linker associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CLASP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
45
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436107.1 (557676..874625)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016527341.1 (20230..332583)

NW_023436107.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U4atac minor spliceosomal RNA Neighboring gene transcription factor CP2 like 1 Neighboring gene uncharacterized LOC118973754 Neighboring gene GLI family zinc finger 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinetochore binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CLIP-associating protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436107.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    557676..874625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037025574.1 → XP_036881469.1  CLIP-associating protein 1 isoform X1

    Conserved Domains (3) summary
    PHA03307
    Location:624 → 847
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  2. XM_017640654.2 → XP_017496143.1  CLIP-associating protein 1 isoform X2

  3. XM_037025576.1 → XP_036881471.1  CLIP-associating protein 1 isoform X5

    Conserved Domains (3) summary
    PHA03307
    Location:624 → 847
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  4. XM_037025575.1 → XP_036881470.1  CLIP-associating protein 1 isoform X4

    Conserved Domains (2) summary
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  5. XM_017640798.2 → XP_017496287.1  CLIP-associating protein 1 isoform X9

  6. XM_037025582.1 → XP_036881477.1  CLIP-associating protein 1 isoform X14

    Conserved Domains (3) summary
    PHA03307
    Location:564 → 811
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  7. XM_037025581.1 → XP_036881476.1  CLIP-associating protein 1 isoform X12

    Conserved Domains (2) summary
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  8. XM_017640947.2 → XP_017496436.1  CLIP-associating protein 1 isoform X11

  9. XM_017641089.2 → XP_017496578.1  CLIP-associating protein 1 isoform X3

  10. XM_037025579.1 → XP_036881474.1  CLIP-associating protein 1 isoform X7

    Conserved Domains (3) summary
    PHA03307
    Location:564 → 790
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  11. XM_037025578.1 → XP_036881473.1  CLIP-associating protein 1 isoform X6

    Conserved Domains (3) summary
    PHA03307
    Location:565 → 715
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  12. XM_017640871.2 → XP_017496360.1  CLIP-associating protein 1 isoform X10

  13. XM_037025580.1 → XP_036881475.1  CLIP-associating protein 1 isoform X8

    Conserved Domains (3) summary
    PHA03307
    Location:622 → 830
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00044
    Location:93 → 120
    HEAT; HEAT repeat [structural motif]
    pfam12348
    Location:324 → 537
    CLASP_N; CLASP N terminal

  14. XM_017641019.2 → XP_017496508.1  CLIP-associating protein 1 isoform X13

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.